View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7900_low_2 (Length: 456)
Name: NF7900_low_2
Description: NF7900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7900_low_2 |
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| [»] scaffold0252 (1 HSPs) |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: scaffold0252 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 20191 - 20646
Alignment:
| Q |
1 |
aatgaccgcgtcccttagatacctcaaatcatcatcacgagttctcgcagctcggaacttgaaccaggtttctcacttttcttcttcctctttt------ |
94 |
Q |
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||||||| ||||||| ||||| |||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20191 |
aatgacctcgtccctcagatatctcaaatcatcatcccgagttctcacagctcggaaccagaaccaggtttctcacttttcttcttcctctttttcactc |
20290 |
T |
|
| Q |
95 |
--------gaatcgattcaaagatttgttatgttttcacaacaatcatcaaaaacactatttttcttcaaaacccaacatgattttagagcgtgttttta |
186 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20291 |
cctctttggaatcgatccaaagatttgttatgttttcacaacaatcatcaaaaacactatttttcttcaaaacccaacatgattttagagcgtgttttta |
20390 |
T |
|
| Q |
187 |
ccaatgattggtctcaagagttagagaaagagttggaagaatgtcgtgaatcattgacccatgaaactcttgtttatgttttgaagcgattggataaaaa |
286 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20391 |
ccaatgattggtctcaag--------------ttggaagcatgtcgtgaatcattgacccatgaaactcttgtttatgttttgaagcgattggataaaaa |
20476 |
T |
|
| Q |
287 |
cccacttaaagtttttacctttttcaactgggtcagtgagaaagagtggtttatggctagttcttcggtttatagttggttcttagggttctagctagta |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20477 |
cccacttaaagtttttacctttttcaactgggtcagtgagaaagagtggtttatggctagttcttcggtttatagttggttcttagggttctagctagta |
20576 |
T |
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| Q |
387 |
ataagagtatgaaagagttttggattgttcatagggctatgaaggaaaaagggttctatttagatgaaga |
456 |
Q |
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| T |
20577 |
ataagagtatgaaagagttttggattgttcttagggctatgaaagaaaaagggttctatttagatgaaga |
20646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 87 - 456
Target Start/End: Original strand, 43434793 - 43435163
Alignment:
| Q |
87 |
cctcttttgaatcgattcaaagatttgttatgttttcacaacaatcatcaaaaacactatttttcttcaaaacccaacatgattttagagcgtgttttta |
186 |
Q |
| |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43434793 |
cctcttttgaaccgatccaaagatttgttatgttttcacaacaatcatcaaaaacactatttttcttcaaaacccaacatgattttggagcgtgttttta |
43434892 |
T |
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| Q |
187 |
ccaatgattggtctcaagagttagagaaagagttggaagaatgtcgtgaatcattgacccatgaaactcttgtttatgttttgaagcgattggataaaaa |
286 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43434893 |
ccaatgattggtctgaagagttagagaaagagttggaagcatgtcgtgaatcattgactcatgaaactgttgtttatgttttgaagcgattggataaaaa |
43434992 |
T |
|
| Q |
287 |
cccacttaaagtttttacctttttcaactgggtcagtgagaaagagtggtttatggctagttcttcggtttatag-ttggttcttagggttctagctagt |
385 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
43434993 |
cccaattaaagtttttacctttttcaattgggtcagtgagaaagagtggtttatggcaagttcttcggtttatagcttggttcttagggttttagctagt |
43435092 |
T |
|
| Q |
386 |
aataagagtatgaaagagttttggattgttcatagggctatgaaggaaaaagggttctatttagatgaaga |
456 |
Q |
| |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
43435093 |
aataaggagatgaaagagttttggattgttcttagggctatgaaggaaaaagggttttatttagatgaaga |
43435163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 119 - 456
Target Start/End: Original strand, 43426320 - 43426658
Alignment:
| Q |
119 |
ttttcacaacaatcatcaaaaacactatttttcttcaaaacccaacatgattttagagcgtgtttttaccaatgattggtctcaagagttagagaaagag |
218 |
Q |
| |
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||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
43426320 |
ttttcacaacagtcataaaaaacactatttttcttcaaaacccaactcaattttagagcgtgtttacaccaatgattggtctgaagagttagagaaagaa |
43426419 |
T |
|
| Q |
219 |
ttggaagaatgtcgtgaatcattgacccatgaaactcttgtttatgttttgaagcgattggataaaaacccacttaaagtttttacctttttcaactggg |
318 |
Q |
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|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||| |
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| T |
43426420 |
tttgaagaatgtcgtgaatcattgacccatgaaactgttgtttatgttttgaagcgattggataataaccctcttaaagttttcacctttttcaattggg |
43426519 |
T |
|
| Q |
319 |
tcagtgagaaagagtggtttatggctagttcttcggtttatag-ttggttcttagggttctagctagtaataagagtatgaaagagttttggattgttca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||| ||| || ||||||| ||||||| ||||||||||||||||||||||| |
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| T |
43426520 |
tcagtgagaaagagtggtttatggctagttcttcggcttatagcttggttctcaggattttagctaggaataagaatatgaaagagttttggattgttct |
43426619 |
T |
|
| Q |
418 |
tagggctatgaaggaaaaagggttctatttagatgaaga |
456 |
Q |
| |
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|| ||||||||||||||| ||||| |||||||||||||| |
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| T |
43426620 |
taaggctatgaaggaaaatgggttttatttagatgaaga |
43426658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 118 - 451
Target Start/End: Original strand, 43440691 - 43441025
Alignment:
| Q |
118 |
gttttcacaacaatcatcaaaaacactatttttcttcaaaacccaacatgattttagagcgtgtttttaccaatgattggtctcaagagttagagaaaga |
217 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
43440691 |
gttttcacaacaatcatcaaaaacactgtttttcttcaaaacccaacatgattttagagcgtgtttacaccaacgattggtctgaagagttagagaaaga |
43440790 |
T |
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| Q |
218 |
gttggaagaatgtcgtgaatcattgacccatgaaactcttgtttatgttttgaagcgattggataaaaacccacttaaagtttttacctttttcaactgg |
317 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
43440791 |
gttggaagcatgtcgtgaatcattgacccatgaaactgttgtttatgttttaaatcgattggataaaaacccaattaaagtttttacctttttcaattgg |
43440890 |
T |
|
| Q |
318 |
gtcagtgagaaagagtggtttatggctagttcttcggtttatag-ttggttcttagggttctagctagtaataagagtatgaaagagttttggattgttc |
416 |
Q |
| |
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|| ||||||||||| ||||||||| ||||||||||||||||| || ||||||| |||| |||||||||| |||| |||||||||||||||||||||| |
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| T |
43440891 |
gttagtgagaaagattggtttatgtaaagttcttcggtttatagcttagttcttacggttttagctagtaacaagaagatgaaagagttttggattgttc |
43440990 |
T |
|
| Q |
417 |
atagggctatgaaggaaaaagggttctatttagat |
451 |
Q |
| |
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|| |||||||| ||| |||||||||||||||||| |
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| T |
43440991 |
ttaaggctatgatggataaagggttctatttagat |
43441025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 352
Target Start/End: Original strand, 43421863 - 43421975
Alignment:
| Q |
240 |
ttgacccatgaaactcttgtttatgttttgaagcgattggataaaaacccacttaaagtttttacctttttcaactgggtcagtgagaaagagtggttta |
339 |
Q |
| |
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|||||||||||||| ||||||| ||||||| | ||||||||| ||||| | |||| || | ||||||||| ||||||||| ||||| | |||||| |
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| T |
43421863 |
ttgacccatgaaaccgttgtttacattttgaaacaattggataatgacccattaaaagcttcttgctttttcaattgggtcagtaagaaaaattggtttt |
43421962 |
T |
|
| Q |
340 |
tggctagttcttc |
352 |
Q |
| |
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|| | |||||||| |
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| T |
43421963 |
tgccaagttcttc |
43421975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 149 - 341
Target Start/End: Original strand, 41930402 - 41930602
Alignment:
| Q |
149 |
ttcttcaaaacccaacatgattttagagcgtgtttttaccaatgattggtctcaagagttagagaaagagttggaagaatgtcgtgaatcattgacccat |
248 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41930402 |
ttcttcaaaacccaacatgattttagagcgtgtttacaccaacgattggtctgaagagttagagaaagagttggaagcatgtcgtgaatcattgacccat |
41930501 |
T |
|
| Q |
249 |
g--------aaactcttgtttatgttttgaagcgattggataaaaacccacttaaagtttttacctttttcaactgggtcagtgagaaagagtggtttat |
340 |
Q |
| |
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| ||||| ||||||||||||| ||| ||||||||||||||| | ||||||||||||||||| |||| ||||| ||||| ||||| |||||||| |
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| T |
41930502 |
gaaactggcaaactgttgtttatgttttaaagtgattggataaaaacctaattaaagtttttacctttatcaattgggttagtgataaagattggtttat |
41930601 |
T |
|
| Q |
341 |
g |
341 |
Q |
| |
|
| |
|
|
| T |
41930602 |
g |
41930602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 340
Target Start/End: Complemental strand, 40186860 - 40186762
Alignment:
| Q |
243 |
acccatgaaactcttgtttatgtttt-gaagcgattggataaaaacccacttaaagtttttacctttttcaactgggtcagtgagaaagagtggtttat |
340 |
Q |
| |
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|||||||||||| ||||||| ||||| ||||||||||||| | || |||| |||||||||| | |||||||||||||||| | ||||| | |||||||| |
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| T |
40186860 |
acccatgaaactgttgtttacgtttttgaagcgattggatcataaaccacataaagttttttcttttttcaactgggtcactcagaaacaatggtttat |
40186762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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