View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7901_high_12 (Length: 291)

Name: NF7901_high_12
Description: NF7901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7901_high_12
NF7901_high_12
[»] chr1 (3 HSPs)
chr1 (44-240)||(33315034-33315230)
chr1 (45-101)||(32544382-32544438)
chr1 (48-99)||(44839901-44839952)
[»] chr4 (5 HSPs)
chr4 (47-264)||(1479274-1479492)
chr4 (45-264)||(6969459-6969679)
chr4 (45-99)||(1311158-1311212)
chr4 (45-99)||(9633074-9633128)
chr4 (148-248)||(49407214-49407320)
[»] chr2 (2 HSPs)
chr2 (50-248)||(6860367-6860567)
chr2 (215-264)||(6860300-6860348)
[»] chr7 (4 HSPs)
chr7 (46-125)||(9892795-9892875)
chr7 (127-213)||(31957112-31957198)
chr7 (46-99)||(8541027-8541080)
chr7 (44-115)||(20492479-20492551)
[»] chr3 (2 HSPs)
chr3 (47-97)||(6821696-6821746)
chr3 (49-99)||(38998923-38998973)
[»] chr8 (1 HSPs)
chr8 (63-99)||(18481249-18481285)
[»] chr5 (1 HSPs)
chr5 (49-124)||(33367961-33368037)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 44 - 240
Target Start/End: Complemental strand, 33315230 - 33315034
Alignment:
Q  44 cctgagctaactcgtgaacgaccccatttacttacctcctattaaactcgacatgaaaattcaaaatctattttgtaacaatgcaatcgtctacaagtag 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||    
T  33315230 cctgagctaactcgtgaacgaccccatttacttacctcctattaaactcgacatgaaagtttgaaatctattttgtaacaatgcaatcgtctacaagtag 33315131  T
Q  144 aaattatacagccgaactcactattatcgtcttcattagaactaacatggtcaacaactcttttagaatcgaagtccatgttgttgaattgaaggtc 240  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  33315130 aaattatacagccgaactcactattatcgtcttcattagaacaaacatggtcaacaactcttttagaatcgaagtccacgttgtcgaattgaaggtc 33315034  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 32544382 - 32544438
Alignment:
Q  45 ctgagctaactcgtgaacgaccccatttacttacctcctattaaactcgacatgaaa 101  Q
    |||||||||||||||||||||| ||||  ||| ||| || |||||||||||||||||    
T  32544382 ctgagctaactcgtgaacgacctcattcgcttgccttctgttaaactcgacatgaaa 32544438  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 44839901 - 44839952
Alignment:
Q  48 agctaactcgtgaacgaccccatttacttacctcctattaaactcgacatga 99  Q
    ||||||||| ||| |||||||||| |||| ||||||||| ||||||||||||    
T  44839901 agctaactcatgagcgaccccattaacttgcctcctattgaactcgacatga 44839952  T

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Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 47 - 264
Target Start/End: Original strand, 1479274 - 1479492
Alignment:
Q  47 gagctaactcgtgaacgaccccatttacttacctcctattaaactcgacatgaaaattca-aaatctattttgtaacaatgcaatcgtctacaagtagaa 145  Q
    ||||||||| ||||  |||||||||||||| ||||||||| ||||||| |||| | |||  |||||||||||||||||||     | |||| ||| ||||    
T  1479274 gagctaacttgtgagtgaccccatttacttgcctcctattgaactcgatatgagagttctgaaatctattttgtaacaat-----catctataagcagaa 1479368  T
Q  146 attatacagccgaactcactattatcgtcttcattagaactaacatggtcaacaactcttttagaat------cgaagtccatgttgttgaattgaaggt 239  Q
    |||||||| || || ||||||||||| ||||||| |||| ||||||| |||||||||||||||||||      ||||||||| ||||| |||||||||||    
T  1479369 attatacaaccaaagtcactattatcatcttcataagaattaacatgatcaacaactcttttagaatctagagcgaagtccacgttgtcgaattgaaggt 1479468  T
Q  240 ctgagaccccattgcagagctgtgt 264  Q
    ||||||  ||||||||||| |||||    
T  1479469 ctgaga-tccattgcagagttgtgt 1479492  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 45 - 264
Target Start/End: Complemental strand, 6969679 - 6969459
Alignment:
Q  45 ctgagctaactcgtgaacgaccccatttacttacctcctattaaactcgacatgaaaattca-aaatctattttgtaacaatgcaatcgtctacaagtag 143  Q
    |||||||||||||||| |||||||||||||||||||| |||| || ||||||||| | |||  |||||||||||||||||||      ||||||||| ||    
T  6969679 ctgagctaactcgtgagcgaccccatttacttacctcttattgaaatcgacatgagagttctgaaatctattttgtaacaatt-----gtctacaagcag 6969585  T
Q  144 aaattatacagccgaactcactattatcgtcttcattagaactaacatggtcaacaactcttttagaat------cgaagtccatgttgttgaattgaag 237  Q
    |||||||||| || |||||||||||||| |||  || |||| ||||||| ||||||||| |||||||||      | ||||| | ||||| |||||||||    
T  6969584 aaattatacaaccaaactcactattatcatctatatcagaattaacatgatcaacaacttttttagaatccagagcaaagtctacgttgtcgaattgaag 6969485  T
Q  238 gtctgagaccccattgcagagctgtgt 264  Q
    ||| |||| |||||||||||| |||||    
T  6969484 gtccgaga-cccattgcagagttgtgt 6969459  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 1311212 - 1311158
Alignment:
Q  45 ctgagctaactcgtgaacgaccccatttacttacctcctattaaactcgacatga 99  Q
    |||| ||||||||||| ||||| |||| |||||||||||||||||||| ||||||    
T  1311212 ctgaactaactcgtgagcgacctcattgacttacctcctattaaactcaacatga 1311158  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 9633128 - 9633074
Alignment:
Q  45 ctgagctaactcgtgaacgaccccatttacttacctcctattaaactcgacatga 99  Q
    |||||||||||||| | |||||||||| |||| ||||||||| ||||||||||||    
T  9633128 ctgagctaactcgtaatcgaccccattcacttgcctcctattgaactcgacatga 9633074  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 49407214 - 49407320
Alignment:
Q  148 tatacagccgaactcactattatcgtcttcattagaactaacatggtcaacaactcttttagaat------cgaagtccatgttgttgaattgaaggtct 241  Q
    |||||| || |||||||||||||  ||| || ||||| ||||||| | |||||||||||||||||      |||||||||  ||||||||||||| ||||    
T  49407214 tatacaaccaaactcactattataatctacaatagaattaacatgattaacaactcttttagaatccagtgcgaagtccacattgttgaattgaaagtct 49407313  T
Q  242 gagaccc 248  Q
    || ||||    
T  49407314 gacaccc 49407320  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 248
Target Start/End: Complemental strand, 6860567 - 6860367
Alignment:
Q  50 ctaactcgtgaacgaccccatttacttacctcctattaaactcgacatgaaaattca-aaatctattttgtaacaatgcaatcgtctacaagtagaaatt 148  Q
    |||||||||||  || | |||||| || |||||| || |||||||||||| | ||   |||||||||||||||||||     ||||||  |  |||||||    
T  6860567 ctaactcgtgagtgatcgcatttatttgcctcctgttgaactcgacatgagagttttgaaatctattttgtaacaat-----cgtctagtatcagaaatt 6860473  T
Q  149 atacagccgaactcactattatcgtcttcattagaactaacatggtcaacaactcttttagaat------cgaagtccatgttgttgaattgaaggtctg 242  Q
    ||||| || |||||||||||||| ||||||| |||| ||||||| |||||||||||||||||||      | ||||||||||||| |||||||||||||     
T  6860472 atacaaccaaactcactattatcatcttcatcagaattaacatgatcaacaactcttttagaatccatagcaaagtccatgttgtcgaattgaaggtcta 6860373  T
Q  243 agaccc 248  Q
    ||||||    
T  6860372 agaccc 6860367  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 6860348 - 6860300
Alignment:
Q  215 aagtccatgttgttgaattgaaggtctgagaccccattgcagagctgtgt 264  Q
    ||||||||||||| ||||||||||||| ||| |||||| |||||||||||    
T  6860348 aagtccatgttgtcgaattgaaggtctaaga-cccattacagagctgtgt 6860300  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 9892795 - 9892875
Alignment:
Q  46 tgagctaactcgtgaacgaccccatttacttacctcctattaaactcgacatgaaaattc-aaaatctattttgtaacaat 125  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||| | ||| ||||||||| ||||||||||    
T  9892795 tgagctaactcgtgaacgaccccatttacttaccccatattaaactcgacatgagagttctaaaatctatattgtaacaat 9892875  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 31957112 - 31957198
Alignment:
Q  127 caatcgtctacaagtagaaattatacagccgaactcactattatcgtcttcattagaactaacatggtcaacaactcttttagaatc 213  Q
    ||||||||||||| ||||||| ||||| ||  |||||||||| || ||| ||| | || |||| || ||||||||| ||||||||||    
T  31957112 caatcgtctacaaatagaaataatacaaccatactcactattgtcatctacatcaaaattaacgtgatcaacaactgttttagaatc 31957198  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 8541027 - 8541080
Alignment:
Q  46 tgagctaactcgtgaacgaccccatttacttacctcctattaaactcgacatga 99  Q
    ||||||||||||| | | ||||||||  |||||||||||||||||| |||||||    
T  8541027 tgagctaactcgtaagcaaccccattatcttacctcctattaaacttgacatga 8541080  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 20492551 - 20492479
Alignment:
Q  44 cctgagctaactcgtgaacgaccccatttacttacctcctattaaactcgacatgaaaattc-aaaatctatt 115  Q
    |||||||||| |||||| |||||| |||  ||| ||||||||||||||||| |||| | ||| ||||||||||    
T  20492551 cctgagctaattcgtgagcgaccctattcgcttgcctcctattaaactcgagatgagagttctaaaatctatt 20492479  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 6821746 - 6821696
Alignment:
Q  47 gagctaactcgtgaacgaccccatttacttacctcctattaaactcgacat 97  Q
    |||||||||||||||||||| |||| ||||| || ||||||||||||||||    
T  6821746 gagctaactcgtgaacgacctcattcacttatcttctattaaactcgacat 6821696  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 38998973 - 38998923
Alignment:
Q  49 gctaactcgtgaacgaccccatttacttacctcctattaaactcgacatga 99  Q
    ||||| |||||| ||||||||||  ||| ||||||||||||||||||||||    
T  38998973 gctaattcgtgagcgaccccattagcttgcctcctattaaactcgacatga 38998923  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 18481285 - 18481249
Alignment:
Q  63 gaccccatttacttacctcctattaaactcgacatga 99  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  18481285 gaccccattgacttacctcctattgaactcgacatga 18481249  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 33367961 - 33368037
Alignment:
Q  49 gctaactcgtgaacgaccccatttacttacctcctattaaactcgacatga-aaattcaaaatctattttgtaacaa 124  Q
    |||||||||| | | ||| | |||||||||||| ||||||||||||||||| |  || |||| ||||||||||||||    
T  33367961 gctaactcgtaagcaacctcttttacttacctcatattaaactcgacatgagagttttaaaaactattttgtaacaa 33368037  T

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