View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7901_high_2 (Length: 467)
Name: NF7901_high_2
Description: NF7901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7901_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 194 - 450
Target Start/End: Original strand, 28679613 - 28679869
Alignment:
| Q |
194 |
ataataaagggatggaggattaggtgttcgatcagctctttgagatgcatactgttcttcttgtactttgattctattctttgagccacttctcgctcaa |
293 |
Q |
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| T |
28679613 |
ataataaagggatggaggattaggtgttcgatcagccctttgagatgcatactgttcttcttgtactttgattctattctttgagccacttctcgctcaa |
28679712 |
T |
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| Q |
294 |
attatgtatagctatatgatatatattatttgttcaatcacaagtattgttagcttttcctacaagcacacagcagaactagttttagaccaagctactc |
393 |
Q |
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| T |
28679713 |
attatgtatagctatatgatatatattatttgttcaatcgcaagtattgttagcttttcctacaagcacacaacagaactagttttagaccaagctactc |
28679812 |
T |
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| Q |
394 |
tcatgcgcaagtgtgaacactaatccctcaaggtaattgagatccacgtaagagatt |
450 |
Q |
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| T |
28679813 |
tcatgcgcaagtgtgaacactaatccctcaaggtaattgagatccacgtaagagatt |
28679869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 28679430 - 28679564
Alignment:
| Q |
12 |
agtttcgtgttaggtgcagccttcaggtggatagccttggtgctgataatgatattagtatttcagatagtagatgtaagttcaggctcaggctatgatt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28679430 |
agtttcgtgttaggtgcagccttcaggtggatagccttggtgctgataatgatattagtatttcagatagtagatgtaagttcaggctcaggctatgatt |
28679529 |
T |
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| Q |
112 |
tcatttgtattatagttgtaatattaatattaata |
146 |
Q |
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| T |
28679530 |
tcatttgtattatagttgtaatattaatattaata |
28679564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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