View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7901_high_4 (Length: 452)
Name: NF7901_high_4
Description: NF7901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7901_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 5 - 439
Target Start/End: Complemental strand, 3346681 - 3346247
Alignment:
| Q |
5 |
tgcagaataattttgttagaattnnnnnnngccttaagtaagaattaaaagtacaagatttatattttattgagatgaagaacatatttaatccaaaaag |
104 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3346681 |
tgcagaataattttgttagaattaaaaaaagccttaagtaagaattaaaagtacaagatttatattttattgaaatgaagaacatatttaatccaaaaag |
3346582 |
T |
|
| Q |
105 |
aattgnnnnnnnnnntataaagacgagaaatgagatattagaaaagtaaataatacaacagaccaattgcttgtggctacagaacagaaaggaaataaaa |
204 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
3346581 |
aattgaaaaaaaaaatataaagacgacaaatgagatattagaaaagtaaataatacaatataccaattgcttgtggctacagaacagaaaggaaataaaa |
3346482 |
T |
|
| Q |
205 |
acgttaggtgtagtggctaaatttacaagatagtaggggctgtctggctgaagttaatgtgttctactttgtttttgaaaggatccgtgacttgatgatt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3346481 |
acgttaggtgtagtggctaaatttacaagatagtaggggctgtctggctgaagttaatgtgttctactttgtttttgaaaggatccgtgacttgatgatt |
3346382 |
T |
|
| Q |
305 |
cctctcttgaatcgattatctatcgttgttttgcaggttgaggtggttaaccggtgggtttggaaacttcatccttcccagcgatacatggtaaaaaatg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3346381 |
cctctcttgaatcgattatctatcgttgttttgcaggttgaggtggttgatcggtgggtttggaaacttcatccttcccaacgatacatggtaaaaaatg |
3346282 |
T |
|
| Q |
405 |
cttataccaacttaacagctgctgatgttgttttt |
439 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3346281 |
cttataccaacttaacagctgctgatgttgttttt |
3346247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 3331485 - 3331260
Alignment:
| Q |
1 |
tacgtgcagaataattttgttagaattnnnnnnngccttaagtaagaattaaaagtacaagatttatattttattgagatgaagaacatatttaatccaa |
100 |
Q |
| |
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|||||||||||| |||||||||||| | ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3331485 |
tacgtgcagaatgattttgttagaaataaaaaaagccttaagtaagaattaaa-gtacaagatatatattttattgagatgaagaacatatttaatccaa |
3331387 |
T |
|
| Q |
101 |
aaagaattgnnnnnnnnnntataaagacgagaaatgagatattagaaaagtaaataatacaacagaccaattgcttgtggctacagaacagaaagg-aaa |
199 |
Q |
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|||||||| |||||||||||||||||||||||| ||||| |||||||||||| | | ||||||||||||||||||||| ||||||| ||| |
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| T |
3331386 |
aaagaatt-caaaaaaaaatataaagacgagaaatgagatattggaaaaataaataatacaatatatcaattgcttgtggctacagaatagaaaggaaaa |
3331288 |
T |
|
| Q |
200 |
taaaaacgttaggtgtagtggctaaatt |
227 |
Q |
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|||||||||| |||||||||||||||| |
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| T |
3331287 |
aaaaaacgttatgtgtagtggctaaatt |
3331260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 312 - 437
Target Start/End: Complemental strand, 3329431 - 3329306
Alignment:
| Q |
312 |
tgaatcgattatctatcgttgttttgcaggttgaggtggttaaccggtgggtttggaaacttcatccttcccagcgatacatggtaaaaaatgcttatac |
411 |
Q |
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||||||||||||||| ||||||||||||||||||||||| | |||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3329431 |
tgaatcgattatctaacgttgttttgcaggttgaggtggatgaccggtcggtttgtaaacttcatccttcccaacgatacatggtaaaaaatgcttatac |
3329332 |
T |
|
| Q |
412 |
caacttaacagctgctgatgttgttt |
437 |
Q |
| |
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|||||||||| || |||||||||||| |
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| T |
3329331 |
caacttaacaactactgatgttgttt |
3329306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 228 - 314
Target Start/End: Complemental strand, 3330378 - 3330293
Alignment:
| Q |
228 |
tacaagatagtaggggctgtctggctgaagttaatgtgttctactttgtttttgaaaggatccgtgacttgatgattcctctcttga |
314 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| |
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| T |
3330378 |
tacaagatagtaggggctgtccggctgaagttaatgtgttctactttg-ttttgaaaggatctgtgagttgatgattcctctcttga |
3330293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 440
Target Start/End: Complemental strand, 27239468 - 27239348
Alignment:
| Q |
320 |
ttatctatcgttgttttgcaggttgaggtggttaaccggtgggtttggaaacttcatccttcccagcgatacatggtaaaaaatgcttataccaacttaa |
419 |
Q |
| |
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||||||| ||| ||||||||||||||||| ||| ||| || ||||| |||||| ||||||| || |||| || |||| |||||||| |||||||| |
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| T |
27239468 |
ttatctaacgtgattttgcaggttgaggtgtcggaccagtgagtctggaagcttcattcttcccatcgttacacagtgaaaagtgcttataacaacttaa |
27239369 |
T |
|
| Q |
420 |
cagctgctgatgttgtttttg |
440 |
Q |
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| T |
27239368 |
ttgttgctgatgttgattttg |
27239348 |
T |
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