View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7901_high_5 (Length: 436)
Name: NF7901_high_5
Description: NF7901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7901_high_5 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 9 - 436
Target Start/End: Complemental strand, 48108503 - 48108077
Alignment:
| Q |
9 |
tggtgttcgtaagatttagaannnnnnncttgttgtaaacaaaatgataaacaccacaaaagttaaaacttttggataatgtgtgacgctacaaaaaata |
108 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48108503 |
tggtgttcgtaagatttagaatttttttcttgttgtaaataaaatgataaacaccacaaaagttaaaacttttggataatgtgtgacgctacaaataata |
48108404 |
T |
|
| Q |
109 |
ttcattctaacaatattagtatagtcggttgagttagattttacgatatgattgcactttttaaataacaaaacaaaatatttaaattctataatagatt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48108403 |
ttcattctaacaatattagtatagtcggttgagttagattttaggatatgattgcactttttaaataacaaaacaaaatatttaaattctataatagatt |
48108304 |
T |
|
| Q |
209 |
ataaggaagnnnnnnncaaaatctctcattctttatttcttactattgctatccaattttatcaaccannnnnnncttnnnnnnnttttaagccgaattt |
308 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| |
|
|
| T |
48108303 |
ataaggaagaaaaaaacaaaatctctcattctttatttcttactattgctatccaattttatcaaccatttttttcttaaaaaatttttaaaccgaattt |
48108204 |
T |
|
| Q |
309 |
tcaaagctcacaggcaatgcacgggcttataaatagccagttaatccctatagggttcattgtataagggacgtttttattttatataatgatgattagc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48108203 |
tcaaagctcacaggcaatgcacgggcttataaatagccagttaatccctata-ggttcattgtataagggacgtttttactttatataatgatgattagt |
48108105 |
T |
|
| Q |
409 |
gctaaaatgaaggttactgcaaaatgct |
436 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
48108104 |
gctaaaatgaaggttactgcaaaatgct |
48108077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University