View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7901_high_8 (Length: 363)
Name: NF7901_high_8
Description: NF7901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7901_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 9 - 201
Target Start/End: Original strand, 35800663 - 35800854
Alignment:
| Q |
9 |
tggtggtaaaagaggtgtacatgcaagcaccctagttgaaaccccaatttagtgtttacaaaaaataaaattaacttt---tagttcataaaagaagtaa |
105 |
Q |
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| T |
35800663 |
tggtggcaaaagaggtgtacatgcaagcaccctagttgaaaccccaatttagtgtttacaaaaaataaaattaacttttactaattcataaaagaagtaa |
35800762 |
T |
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| Q |
106 |
atgcgacaatttagctcatcgttgaatcaattttgaaatgtgagaacatttggc-taaagactttgttgttacgatgttttttcacattgacggatt |
201 |
Q |
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| T |
35800763 |
atgcgacaatttagctcctc-----atcaattttgagatgtgagaacatttggcttaaagactttgttgttacgatgttttttcacatcgacggatt |
35800854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 238 - 346
Target Start/End: Original strand, 35800987 - 35801095
Alignment:
| Q |
238 |
ggattattttggtccctagatattatccaggcaaacccatttggatgatgaatcctacaacaagcttgtgcagaaagctaaggatgacgggtatgatgcg |
337 |
Q |
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| T |
35800987 |
ggattattttggtccctagatattatccaggcaaacccatttggatgatgaatcctacaacaagcttgtgcagaaaactaaggatgacgggtatgatgcg |
35801086 |
T |
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| Q |
338 |
accaaattg |
346 |
Q |
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| T |
35801087 |
accaaattg |
35801095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 239 - 346
Target Start/End: Complemental strand, 54848698 - 54848591
Alignment:
| Q |
239 |
gattattttggtccctagatattatccaggcaaacccatttggatgatgaatcctacaacaagcttgtgcagaaagctaaggatgacgggtatgatgcga |
338 |
Q |
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| T |
54848698 |
gattattttggttcctagatattatccaggcaaacctatttggatgatgaatcctacaacaaacttgttcagaaagctaaggatgacgggtatgatgtga |
54848599 |
T |
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| Q |
339 |
ccaaattg |
346 |
Q |
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| T |
54848598 |
ccaaattg |
54848591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 54816661 - 54816564
Alignment:
| Q |
238 |
ggattattttggtccctagatattatccaggcaaacccatttggatgatgaatcctacaacaagcttgtgcagaaagctaaggatgacgggtatgatg |
335 |
Q |
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| T |
54816661 |
ggatcattttggttcctagatattatgcaggcaaccccatttggatgaagaaatctacaacgagcttgttcagaaagctaaggaagaagggtatgatg |
54816564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 54819649 - 54819552
Alignment:
| Q |
238 |
ggattattttggtccctagatattatccaggcaaacccatttggatgatgaatcctacaacaagcttgtgcagaaagctaaggatgacgggtatgatg |
335 |
Q |
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| T |
54819649 |
ggattattttggtccctagatactatccaggcaaccccatttggatgaaacaatctacaaccagcttgttgagaaagctaaggaagaaggctatgatg |
54819552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 54848971 - 54848900
Alignment:
| Q |
80 |
taacttttagttcataaaagaagtaaatgcgacaatttagctcatcgttgaatcaattttgaaatgtgagaa |
151 |
Q |
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||||||||||||||| ||||||||||||| ||||||||| | | | |||||||||| || || ||||||||| |
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| T |
54848971 |
taacttttagttcatgaaagaagtaaatgagacaatttatcacctggttgaatcaaattggagatgtgagaa |
54848900 |
T |
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