View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7901_low_11 (Length: 355)
Name: NF7901_low_11
Description: NF7901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7901_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 334
Target Start/End: Complemental strand, 40005169 - 40004842
Alignment:
| Q |
13 |
aatatggaaaggtttgcagtcttgaaaactctgtgaaacatagttcttttattgacttgcttcttatttttcccccaaaaatagtactcggttatacaca |
112 |
Q |
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| T |
40005169 |
aatatggaaaggtttgcagtcttgaaaactctgtgaaacatagttcttttattgacttgcttcttattttccccccaaaaatggtactcggttatacaca |
40005070 |
T |
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| Q |
113 |
gtagccagtatgagacaatacaaatggaacaacttcatgtttgtg------attcaagcatacaaattttgatagctatggttctgatagtaactctatg |
206 |
Q |
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| T |
40005069 |
gtagccagtatgagacaatacaaatggaacaacttcatgtctgtgtctgtgattcaagcatacaaattttgatagctatggttctgatagtaactctatg |
40004970 |
T |
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| Q |
207 |
tatggcttgtagttgtaactttgtactgcattttgggttcttaaaatttgtttcaattatattcttcattattttactactgttactaatggctttcagt |
306 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40004969 |
tatggcttgtagttgtaactttgtactacattttgggttcttaaaatttgtttcaattatattcttcattattttactactgttactaatggctttcagt |
40004870 |
T |
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| Q |
307 |
tgtattgcagcttagttccggtcaactg |
334 |
Q |
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| T |
40004869 |
tgtattgcagcttagttccggtcaactg |
40004842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 334
Target Start/End: Original strand, 50241846 - 50241943
Alignment:
| Q |
237 |
ttttgggttcttaaaatttgtttcaattatattcttcattattttactactgttactaatggctttcagttgtattgcagcttagttccggtcaactg |
334 |
Q |
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| T |
50241846 |
ttttgggttcttaaattttatttcaaatttattcttcagccatttactactgttactaatggctttgagtgttattgcagcttagtactggtcaactg |
50241943 |
T |
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