View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7901_low_13 (Length: 321)
Name: NF7901_low_13
Description: NF7901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7901_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 51150594 - 51150839
Alignment:
| Q |
17 |
atcatagatttcgcaggtaagtgcatgtgtctatccgaggacatataactatatgcttcttttctttctcttctgtaaattgaacaaatgaacgatccta |
116 |
Q |
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| T |
51150594 |
atcatagattttgcaggtaagtgcatgtgtctatccgaggacatataactatatgcttcttttctttctcttctgtaaattgaacaaatgaaagatccta |
51150693 |
T |
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| Q |
117 |
gnnnnnnnn-actagagctgcgtcttgtaaacaagtaatttctaactactataaatcatatattgacttctaaataacatcaacagtaaataaataactc |
215 |
Q |
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| T |
51150694 |
gttttcttttactagagctgcgtcttgtaaacaagtaatttctaactactataaatcatatattgacttctaaataacatcaacagtaaataaataactc |
51150793 |
T |
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| Q |
216 |
aaatagttaattactgaatttaattatatcaataacatgttcgtgaaattttgttaggg |
274 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51150794 |
aaatag-------------ttaattatatcaataacatgttcgtgaaattttgttaggg |
51150839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 51162895 - 51163140
Alignment:
| Q |
17 |
atcatagatttcgcaggtaagtgcatgtgtctatccgaggacatataactatatgcttcttttctttctcttctgtaaattgaacaaatgaacgatccta |
116 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51162895 |
atcatagattttgcaggtaagtgcatgtgtctatccgaggacatataactatatgcttcttttctttctcttctgtaaattgaacaaatgaaagatccta |
51162994 |
T |
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| Q |
117 |
gnnnnnnnn-actagagctgcgtcttgtaaacaagtaatttctaactactataaatcatatattgacttctaaataacatcaacagtaaataaataactc |
215 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51162995 |
gttttcttttactagagctgcgtcttgtaaacaagtaatttctaactactataaatcatatattgacttctaaataacatcaacagtaaataaataactc |
51163094 |
T |
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| Q |
216 |
aaatagttaattactgaatttaattatatcaataacatgttcgtgaaattttgttaggg |
274 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51163095 |
aaatag-------------ttaattatatcaataacatgttcgtgaaattttgttaggg |
51163140 |
T |
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