View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7901_low_18 (Length: 256)
Name: NF7901_low_18
Description: NF7901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7901_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 48107874 - 48108100
Alignment:
| Q |
17 |
ataatcatattaaaagatgtgtcaatattattacctcaatagtagcaaaataatcgtagtccaaagaatgaacgcctagccctgcatatatggtgtgaag |
116 |
Q |
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| T |
48107874 |
ataatcatattaaaagatgtgtca------ttacctcaatagtagcaaaataatcatagtccaaagaatgaacgcctagccctgcatatatggtgtgaag |
48107967 |
T |
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| Q |
117 |
atatatatgttagatattaaaagaattgtagcactgaattat--agagagggagagattgaaacctgagataaataaaaggaaagaggtggtgatgaaca |
214 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48107968 |
atatatatgttagatattaaaagaatagtagcactgaattatagagagagggagagattgaaacctgagataaataaaaggaaagaggtggtgatgaaca |
48108067 |
T |
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| Q |
215 |
acaaattgcagcattttgcagtaaccttcattt |
247 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
48108068 |
acaaattgcagcattttgcagtaaccttcattt |
48108100 |
T |
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