View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7901_low_19 (Length: 248)
Name: NF7901_low_19
Description: NF7901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7901_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 8699190 - 8698977
Alignment:
| Q |
20 |
aaaagatctataaagtcaagaccccaattttgattatttctaatggtcaactgcaataaatgaagggcacaatgatatagagt-atagaccacttaagtc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
8699190 |
aaaagatctataaagtcaagaccccaattttgattatttttaatggtcaactgcaataaatgaagggcacaatgatatagagttatagaccacttaggtc |
8699091 |
T |
|
| Q |
119 |
a---aggtaaaatcgttattattgtggaaacataaggttaaatactaaacaagacacttgataaatatatgtcacaagtggaagacaagacaacaataat |
215 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8699090 |
atcaaggtaaaatcgttattattgtggaaacataaggttaaatactaaacaagacacttgataaatatatgtcacaagtggaagacaagacaacaataat |
8698991 |
T |
|
| Q |
216 |
ttcttagcctcctc |
229 |
Q |
| |
|
|||||||||||||| |
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| T |
8698990 |
ttcttagcctcctc |
8698977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 9051077 - 9050864
Alignment:
| Q |
20 |
aaaagatctataaagtcaagaccccaattttgattatttctaatggtcaactgcaataaatgaagggcacaatgatatagagt-atagaccacttaagtc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
9051077 |
aaaagatctataaagtcaagaccccaattttgattatttttaatggtcaactgcaataaatgaagggcacaatgatatagagttatagaccacttaggtc |
9050978 |
T |
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| Q |
119 |
a---aggtaaaatcgttattattgtggaaacataaggttaaatactaaacaagacacttgataaatatatgtcacaagtggaagacaagacaacaataat |
215 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9050977 |
atcaaggtaaaatcgttattattgtggaaacataaggttaaatactaaacaagacacttgataaatatatgtcacaagtggaagacaagacaacaataat |
9050878 |
T |
|
| Q |
216 |
ttcttagcctcctc |
229 |
Q |
| |
|
|||||||||||||| |
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| T |
9050877 |
ttcttagcctcctc |
9050864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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