View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7901_low_7 (Length: 397)

Name: NF7901_low_7
Description: NF7901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7901_low_7
NF7901_low_7
[»] chr2 (11 HSPs)
chr2 (18-386)||(9287375-9287743)
chr2 (186-383)||(9300702-9300899)
chr2 (77-383)||(9271510-9271819)
chr2 (169-275)||(10346608-10346717)
chr2 (162-272)||(10351081-10351195)
chr2 (164-271)||(10334603-10334716)
chr2 (18-275)||(10340359-10340596)
chr2 (18-122)||(10351213-10351315)
chr2 (69-136)||(10334727-10334796)
chr2 (69-118)||(10370888-10370938)
chr2 (56-103)||(10346751-10346799)
[»] chr6 (1 HSPs)
chr6 (160-269)||(10857008-10857117)
[»] chr4 (3 HSPs)
chr4 (160-275)||(26573869-26573986)
chr4 (40-136)||(26573993-26574097)
chr4 (179-212)||(560527-560560)
[»] chr3 (2 HSPs)
chr3 (163-267)||(39426803-39426907)
chr3 (160-223)||(39426149-39426212)
[»] chr7 (1 HSPs)
chr7 (180-271)||(45241679-45241770)
[»] chr5 (1 HSPs)
chr5 (160-258)||(36223634-36223733)


Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 9287743 - 9287375
Alignment:
Q  18 gaattgataatgaatatgtagttgcacccatttttatctctctttttgaattgtctaagatcacactatccctcttgtgtaaaactgatacatcactatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9287743 gaattgataatgaatatgtagttgcacccatttttatctctctttttgaattgtctaagatcacactatccctcttgtgtaaaactgatacatcactatt 9287644  T
Q  118 tttagtgaactgataaaaggatataataatcttctacctttatggcatagacatgtgaagtatgagcatcatatcacaatcaatttagatgtcaaaattg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9287643 tttagtgaactgataaaaggatataataatcttctacctttatggcatagacatgtgaagtatgagcatcatatcacaatcaatttagatgtcaaaattg 9287544  T
Q  218 aaaatggttgatttaaaatatttgtgtttgtgaactctaaagtgaggcaagcatcttagtaatgattttggtatccagttgcagctatctctttttggtt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9287543 aaaatggttgatttaaaatatttgtgtttgtgaactctaaagtgaggcaagcatcttagtaatgattttggtatccagttgcagctatctctttttggtt 9287444  T
Q  318 tgctgttttcatttttagtatttggatgcatattcaaagaaatgactattgtaggttttaattcttctc 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9287443 tgctgttttcatttttagtatttggatgcatattcaaagaaatgactattgtaggttttaattcttctc 9287375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 186 - 383
Target Start/End: Complemental strand, 9300899 - 9300702
Alignment:
Q  186 tcatatcacaatcaatttagatgtcaaaattgaaaatggttgatttaaaatatttgtgtttgtgaactctaaagtgaggcaagcatcttagtaatgattt 285  Q
    |||||||||| |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9300899 tcatatcacagtcaatttagatgtcaatattgaaaatggtcgatttaaaaaatttgtgtttgtgaactctaaaatgaggcaagcatcttagtaatgattt 9300800  T
Q  286 tggtatccagttgcagctatctctttttggtttgctgttttcatttttagtatttggatgcatattcaaagaaatgactattgtaggttttaattctt 383  Q
    |||||||||| |||||| |||||||||||||||||| |||| || |||||||||||||||||| || |||| |||  |||||||||||||||||||||    
T  9300799 tggtatccagatgcagcaatctctttttggtttgctattttgatatttagtatttggatgcatgtttaaaggaattcctattgtaggttttaattctt 9300702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 77 - 383
Target Start/End: Complemental strand, 9271819 - 9271510
Alignment:
Q  77 atcacactatccctcttgtgtaaaactgatacatcactatttttagtg-aactgataaaaggatataataatcttctacctttatggcatagacatgtga 175  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||| || ||||||| |  ||| |||  | |  |  ||| |||||| | |||||||    
T  9271819 atcacactatccctcttgtgtaaaactgatatatccctatttttagtggaattgataaacgc-tattatagccgtaaagattt-tggcatcggcatgtga 9271722  T
Q  176 agtatgagcatcatatcacaatcaatttagatgtcaaaattgaaaatggttgatttaaaatatttgtgtttgtg----aactctaaagtgaggcaagcat 271  Q
    || |||| | |||| |||||||||||||||||||||| |||||||||||| ||||||||| ||||| |||||||     |||||||| ||||||||||||    
T  9271721 agcatgaacttcatgtcacaatcaatttagatgtcaatattgaaaatggtcgatttaaaagatttgggtttgtggactgactctaaaatgaggcaagcat 9271622  T
Q  272 cttagtaatgattttggtatccagttgcagctatctctttttggtttgctgttttcatttttagtatttggatgcatattcaaagaaatgactattgtag 371  Q
    ||||||||||| ||||| |||||| |||||| ||||||||||||||| || |||||||||||||||||||||||||  || |||| ||||||||||||||    
T  9271621 cttagtaatgagtttggcatccagatgcagcaatctctttttggtttactattttcatttttagtatttggatgcacgtttaaaggaatgactattgtag 9271522  T
Q  372 gttttaattctt 383  Q
    ||||||||||||    
T  9271521 gttttaattctt 9271510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 169 - 275
Target Start/End: Complemental strand, 10346717 - 10346608
Alignment:
Q  169 catgtgaagtatgagcatcatatcacaatcaatttagatgtcaaaattgaaaatggttgatttaaaa---tatttgtgtttgtgaactctaaagtgaggc 265  Q
    ||||||||| |||||||||||||||| ||||||||||||||||| || ||||||||| ||||| |||   | | ||||||||||||||||||| ||||||    
T  10346717 catgtgaagcatgagcatcatatcaccatcaatttagatgtcaatatcgaaaatggtcgatttgaaaatttgtatgtgtttgtgaactctaaaatgaggc 10346618  T
Q  266 aagcatctta 275  Q
    ||||||||||    
T  10346617 aagcatctta 10346608  T

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Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 162 - 272
Target Start/End: Complemental strand, 10351195 - 10351081
Alignment:
Q  162 gcatagacatgtgaagtatgagcatcatatcacaatcaatttagatgtcaaaattgaaaatggttgatttaaaatatt----tgtgtttgtgaactctaa 257  Q
    |||||| ||||||||| |||| ||||||||||| |||||| |||||||||| |||||||||||| ||||||||| |||    ||||||||||||||||||    
T  10351195 gcataggcatgtgaagcatgatcatcatatcaccatcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgtatgtgtttgtgaactctaa 10351096  T
Q  258 agtgaggcaagcatc 272  Q
    | |||| ||||||||    
T  10351095 aatgagccaagcatc 10351081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 271
Target Start/End: Complemental strand, 10334716 - 10334603
Alignment:
Q  164 atagacatgtgaagtatgagcatcatatcacaatcaatttagatgtcaaaattgaaaatggttgatttaaaa------tatttgtgtttgtgaactctaa 257  Q
    |||| |||| |||| |||||||||||||||| |||||| |||||||||| |||||||||||| |||||||||      ||||||||||| ||||||||||    
T  10334716 ataggcatgcgaagcatgagcatcatatcaccatcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgtatttgtgtttttgaactctaa 10334617  T
Q  258 agtgaggcaagcat 271  Q
    | ||||||||||||    
T  10334616 aatgaggcaagcat 10334603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 10340596 - 10340359
Alignment:
Q  18 gaattgataatgaatatgtagttgcacccatttttatctctctttttgaattgtctaagatcacac---tatccctcttgtgtaaaactgatacatcact 114  Q
    |||||||||||||   || ||||||||||||||||||| ||||||||||||||||| |||||||||   ||||||||||||||| |||||||  | ||||    
T  10340596 gaattgataatga---tggagttgcacccatttttatccctctttttgaattgtctgagatcacacacttatccctcttgtgtagaactgatgtaccact 10340500  T
Q  115 atttttagt-gaactgataaaaggatataataatcttctacctttatggcatagacatgtgaagtatgagcatcatatcacaatcaatttagatgtcaaa 213  Q
     |||||||| || ||||||||||              |||   || |||| ||| |||||||||||||||||||||| ||| ||||||||||||||  |     
T  10340499 gtttttagtagagctgataaaag--------------cta---ttttggcgtaggcatgtgaagtatgagcatcata-caccatcaatttagatgtatat 10340418  T
Q  214 attgaaaatggttgatttaaaatatttgtgtttgtgaactctaaagtgaggcaagcatctta 275  Q
    |||||||||||| || |||||| |||  |||||||||| | |||| ||||||||||||||||    
T  10340417 attgaaaatggtcga-ttaaaaaatt--tgtttgtgaattataaaatgaggcaagcatctta 10340359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 10351315 - 10351213
Alignment:
Q  18 gaattgataatgaatatgtagttgcacccatttttatctctctttttgaattgtctaagatcac-actatccctcttgtgtaaaactgatacatcactat 116  Q
    |||||||||||||   || ||||||||||||||||||| |||||||||| |||||| |||| ||   | ||||||||||||||||||| || | ||||||    
T  10351315 gaattgataatga---tggagttgcacccatttttatccctctttttgatttgtctgagattactgttctccctcttgtgtaaaactgttatagcactat 10351219  T
Q  117 ttttag 122  Q
    ||||||    
T  10351218 ttttag 10351213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 10334796 - 10334727
Alignment:
Q  69 tgtctaagatcacact-atccctcttgtgtaaaactgatacatcactatttttagt-gaactgataaaag 136  Q
    |||||||||||||| | |||||||||||||||||||| ||||||| ||||| |||| || ||||||||||    
T  10334796 tgtctaagatcacagttatccctcttgtgtaaaactgttacatcattatttgtagtggagctgataaaag 10334727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 10370938 - 10370888
Alignment:
Q  69 tgtctaagatcacact-atccctcttgtgtaaaactgatacatcactattt 118  Q
    |||||||||||||| | |||||| ||||||||||||| |||||||||||||    
T  10370938 tgtctaagatcacagttatcccttttgtgtaaaactgttacatcactattt 10370888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 10346799 - 10346751
Alignment:
Q  56 tctctttttgaattgtctaagatcacac-tatccctcttgtgtaaaact 103  Q
    |||||||||||||||||| ||||||||| || || ||||||||||||||    
T  10346799 tctctttttgaattgtctgagatcacacttagccttcttgtgtaaaact 10346751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 10857008 - 10857117
Alignment:
Q  160 tggcatagacatgtgaagtatgagcatcatatcacaatcaatttagatgtcaaaattgaaaatggttgatttaaaatatttgtgtttgtgaactctaaag 259  Q
    |||||||| ||||| ||| ||||||||||||||||  ||||||||||||| || ||| || ||||| ||||||||| ||||||||||||||||||||||     
T  10857008 tggcataggcatgtaaagcatgagcatcatatcaccttcaatttagatgtaaatattcaatatggtcgatttaaaaaatttgtgtttgtgaactctaaaa 10857107  T
Q  260 tgaggcaagc 269  Q
    ||||||||||    
T  10857108 tgaggcaagc 10857117  T

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Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 26573986 - 26573869
Alignment:
Q  160 tggcatagacatgtgaagtatgagcatcatatcacaatcaatttagatgtcaaaattgaaaatggttgatttaaaatatttg--tgtttgtgaactctaa 257  Q
    |||||||| |||||||||  ||||||||||||||| |||||| |||||||||| ||||||| |||   |||||||| |||||  ||||||||||||||||    
T  26573986 tggcataggcatgtgaagcttgagcatcatatcaccatcaatgtagatgtcaatattgaaattgggcaatttaaaaaatttgtatgtttgtgaactctaa 26573887  T
Q  258 agtgaggcaagcatctta 275  Q
    | ||||||||||||||||    
T  26573886 aatgaggcaagcatctta 26573869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 26574097 - 26573993
Alignment:
Q  40 tgcacccatttttatctctctttttgaattgtctaagatcaca-ctatccctct------tgtgtaaaactgatacatcactatttttagt-gaactgat 131  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||  |||||||||      ||||||||||||||| || |||||||||| | || |||||    
T  26574097 tgcacccatttttatccctctttttgaattttctgagatcacagttatccctcttatgtgtgtgtaaaactgatatattactatttttaatggagctgat 26573998  T
Q  132 aaaag 136  Q
    |||||    
T  26573997 aaaag 26573993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 560560 - 560527
Alignment:
Q  179 atgagcatcatatcacaatcaatttagatgtcaa 212  Q
    |||||||||||||||| |||||||||||||||||    
T  560560 atgagcatcatatcaccatcaatttagatgtcaa 560527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 163 - 267
Target Start/End: Complemental strand, 39426907 - 39426803
Alignment:
Q  163 catagacatgtgaagtatgagcatcatatcacaatcaatttagatgtcaaaattgaaaatggttgatttaaaatatttgtgtttgtgaactctaaagtga 262  Q
    ||||| |||||||||  ||||||||||||||| ||||||||| ||||||| |||||||||||| ||| || || || ||||||||||||||||||| |||    
T  39426907 cataggcatgtgaagcttgagcatcatatcaccatcaatttaaatgtcaatattgaaaatggtcgatctagaaaatctgtgtttgtgaactctaaaatga 39426808  T
Q  263 ggcaa 267  Q
    |||||    
T  39426807 ggcaa 39426803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 39426212 - 39426149
Alignment:
Q  160 tggcatagacatgtgaagtatgagcatcatatcacaatcaatttagatgtcaaaattgaaaatg 223  Q
    |||||||| ||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||    
T  39426212 tggcataggcatgtgaagcatgagcatcatatcacagtcaatttagatgtccatattgaaaatg 39426149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 45241770 - 45241679
Alignment:
Q  180 tgagcatcatatcacaatcaatttagatgtcaaaattgaaaatggttgatttaaaatatttgtgtttgtgaactctaaagtgaggcaagcat 271  Q
    ||||||||||||||| ||||||||||||||||| |||||| ||| |||||||| ||  |||||||||||||||| |||| ||||||||||||    
T  45241770 tgagcatcatatcaccatcaatttagatgtcaatattgaagatgattgatttataacctttgtgtttgtgaactataaaatgaggcaagcat 45241679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 36223733 - 36223634
Alignment:
Q  160 tggcatagacatgtgaagtatgagcatc-atatcacaatcaatttagatgtcaaaattgaaaatggttgatttaaaatatttgtgtttgtgaactctaaa 258  Q
    |||| ||| ||||| ||| ||||||||  ||||||| ||||||||||||||||| ||||||||| || |||||| || || |||||||||||||||||||    
T  36223733 tggcttaggcatgttaagcatgagcatatatatcaccatcaatttagatgtcaatattgaaaattgtcgatttagaaaatctgtgtttgtgaactctaaa 36223634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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