View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7901_low_8 (Length: 395)
Name: NF7901_low_8
Description: NF7901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7901_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 35431130 - 35430936
Alignment:
| Q |
16 |
catatccaacaccaggacacccctaatccaagaagtgtttgtgcttcatagattctaacctgtagcgtgaaggtcacaattatgatagttagaaaattat |
115 |
Q |
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| T |
35431130 |
catatccaacaccaggacacccctaatccaaaaagtgtctgtgcttcatagattctaacctgtatcgtgaaggtcacaattatgatagttagaaaattat |
35431031 |
T |
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| Q |
116 |
acataacataatgcctt-aagaaagaaaattcatttcattacagacatatgagacggt-nnnnnnnngctcaattctaaatctatgctcaaactc |
208 |
Q |
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| T |
35431030 |
acataacataatgccttaaagaaagaaaattcatttcattacagacatatgagacagtaaaaaaaaagctcaattctaaatctatgctcaaactc |
35430936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 273 - 382
Target Start/End: Complemental strand, 35430872 - 35430763
Alignment:
| Q |
273 |
tccaatcttctaaatagcagtgttttagttaaaacaattcatgctaaagaatgacatacataaaaactaaagaacgtacgtcaaagaaatttaatgaaca |
372 |
Q |
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| T |
35430872 |
tccaatcttctaaatagcagtgttttagttaaaacaattcatgctaacgaatgacatacataaaaactaaagaacgtacgtcaaagaaatttaatgaaca |
35430773 |
T |
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| Q |
373 |
tgtaaagaat |
382 |
Q |
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|||||||||| |
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| T |
35430772 |
tgtaaagaat |
35430763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 13436952 - 13436907
Alignment:
| Q |
24 |
acaccaggacacccctaatccaagaagtgtttgtgcttcatagatt |
69 |
Q |
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| T |
13436952 |
acaccgggacacgcctaatccaaggagtgtctgtgcttcatagatt |
13436907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 33419247 - 33419292
Alignment:
| Q |
20 |
tccaacaccaggacacccctaatccaagaagtgtttgtgcttcata |
65 |
Q |
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| T |
33419247 |
tccaacaccaggacatgcctaatccaagaagtatttgtgcttcata |
33419292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 17876243 - 17876285
Alignment:
| Q |
24 |
acaccaggacacccctaatccaagaagtgtttgtgcttcatag |
66 |
Q |
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| T |
17876243 |
acaccaggacacacctaatccaaggagtgtctgtgcttcatag |
17876285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 17005590 - 17005548
Alignment:
| Q |
24 |
acaccaggacacccctaatccaagaagtgtttgtgcttcatag |
66 |
Q |
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| T |
17005590 |
acaccaggacacctctaatccgaggagtgtttgtgcttcatag |
17005548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 25211607 - 25211648
Alignment:
| Q |
24 |
acaccaggacacccctaatccaagaagtgtttgtgcttcata |
65 |
Q |
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| T |
25211607 |
acaccaggacacgcctaatctgagaagtgtttgtgcttcata |
25211648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 30563492 - 30563540
Alignment:
| Q |
18 |
tatccaacaccaggacacccctaatccaagaagtgtttgtgcttcatag |
66 |
Q |
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||||| ||||||||||| |||||||||||| ||| ||||||||||||| |
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| T |
30563492 |
tatccgacaccaggacaaccctaatccaaggagtacttgtgcttcatag |
30563540 |
T |
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