View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7902_high_9 (Length: 255)

Name: NF7902_high_9
Description: NF7902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7902_high_9
NF7902_high_9
[»] chr3 (23 HSPs)
chr3 (49-238)||(42481270-42481459)
chr3 (79-195)||(4169098-4169214)
chr3 (88-188)||(31545625-31545725)
chr3 (79-187)||(44080257-44080364)
chr3 (79-189)||(1705669-1705779)
chr3 (79-188)||(42637956-42638065)
chr3 (79-188)||(3823651-3823761)
chr3 (99-154)||(23163349-23163404)
chr3 (80-170)||(5341877-5341967)
chr3 (92-169)||(27335402-27335479)
chr3 (82-188)||(3785965-3786071)
chr3 (91-172)||(13358108-13358189)
chr3 (79-195)||(22432330-22432446)
chr3 (88-188)||(26308640-26308740)
chr3 (104-183)||(27079301-27079380)
chr3 (104-183)||(27085098-27085177)
chr3 (104-190)||(27707698-27707784)
chr3 (119-184)||(11501310-11501375)
chr3 (91-188)||(19624317-19624414)
chr3 (79-170)||(9710742-9710832)
chr3 (91-129)||(11509915-11509953)
chr3 (111-159)||(23163788-23163836)
chr3 (135-179)||(39126219-39126263)
[»] chr6 (12 HSPs)
chr6 (81-187)||(3620761-3620867)
chr6 (79-188)||(10304700-10304809)
chr6 (79-235)||(3222431-3222588)
chr6 (83-235)||(138668-138820)
chr6 (83-235)||(146689-146841)
chr6 (79-170)||(33815034-33815125)
chr6 (79-188)||(22608360-22608469)
chr6 (88-188)||(9068415-9068514)
chr6 (91-186)||(2834974-2835069)
chr6 (133-188)||(24386266-24386321)
chr6 (141-195)||(2430600-2430654)
chr6 (95-168)||(9474646-9474718)
[»] chr2 (7 HSPs)
chr2 (79-234)||(1400728-1400883)
chr2 (82-188)||(30906051-30906157)
chr2 (83-188)||(43900532-43900637)
chr2 (79-181)||(45305967-45306068)
chr2 (92-188)||(33667328-33667424)
chr2 (79-231)||(28527280-28527431)
chr2 (92-188)||(7378470-7378564)
[»] chr7 (11 HSPs)
chr7 (83-234)||(21589627-21589778)
chr7 (79-188)||(31303453-31303562)
chr7 (91-188)||(22740659-22740756)
chr7 (83-188)||(28804990-28805094)
chr7 (79-195)||(5083785-5083900)
chr7 (89-188)||(18312837-18312935)
chr7 (83-170)||(20556770-20556857)
chr7 (83-188)||(4290831-4290935)
chr7 (91-234)||(21548464-21548607)
chr7 (92-169)||(32964775-32964852)
chr7 (123-188)||(5174910-5174975)
[»] chr8 (14 HSPs)
chr8 (79-188)||(5321962-5322071)
chr8 (79-188)||(5573780-5573888)
chr8 (79-188)||(38606828-38606937)
chr8 (89-188)||(15714695-15714794)
chr8 (83-188)||(1240901-1241005)
chr8 (79-170)||(31273580-31273671)
chr8 (83-167)||(29367076-29367160)
chr8 (82-147)||(32959563-32959628)
chr8 (79-179)||(31596795-31596894)
chr8 (79-188)||(1251477-1251585)
chr8 (89-170)||(26493355-26493435)
chr8 (141-188)||(24575907-24575954)
chr8 (133-195)||(26914684-26914746)
chr8 (79-125)||(33286217-33286263)
[»] chr1 (9 HSPs)
chr1 (83-195)||(29677078-29677190)
chr1 (91-188)||(34364243-34364340)
chr1 (80-188)||(38951906-38952016)
chr1 (88-184)||(42604227-42604323)
chr1 (79-170)||(29167828-29167918)
chr1 (141-188)||(2569970-2570017)
chr1 (91-169)||(9468120-9468199)
chr1 (79-170)||(25238477-25238567)
chr1 (79-168)||(517433-517522)
[»] chr5 (13 HSPs)
chr5 (79-195)||(35922732-35922848)
chr5 (94-227)||(42034771-42034904)
chr5 (80-232)||(33958936-33959088)
chr5 (90-188)||(13312609-13312707)
chr5 (79-183)||(31189578-31189681)
chr5 (79-188)||(22169457-22169566)
chr5 (79-127)||(36169394-36169442)
chr5 (111-184)||(19621477-19621550)
chr5 (79-188)||(38521968-38522076)
chr5 (83-188)||(43461701-43461806)
chr5 (92-169)||(7156105-7156182)
chr5 (103-166)||(43262708-43262771)
chr5 (92-169)||(30704398-30704476)
[»] chr4 (14 HSPs)
chr4 (80-188)||(33179759-33179867)
chr4 (79-188)||(33249616-33249725)
chr4 (79-188)||(1966833-1966941)
chr4 (79-188)||(16583596-16583705)
chr4 (102-190)||(17633339-17633427)
chr4 (88-183)||(35544425-35544519)
chr4 (92-169)||(24669197-24669274)
chr4 (79-188)||(9809074-9809183)
chr4 (79-183)||(8740796-8740899)
chr4 (88-188)||(14351071-14351171)
chr4 (79-170)||(55666844-55666934)
chr4 (79-167)||(9810760-9810848)
chr4 (79-126)||(20874833-20874880)
chr4 (91-129)||(19596794-19596832)
[»] scaffold1126 (1 HSPs)
scaffold1126 (79-234)||(163-318)
[»] scaffold0024 (1 HSPs)
scaffold0024 (92-169)||(112158-112235)
[»] scaffold0251 (1 HSPs)
scaffold0251 (79-170)||(10633-10724)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 49 - 238
Target Start/End: Original strand, 42481270 - 42481459
Alignment:
Q  49 ttgaaaatttcaataaacaagatatatagtttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattatttttt 148  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| |||| ||||||||||     
T  42481270 ttgaaaatttcaattaacaagatatatagtttgcgtgaccactatttaaaaactgaaaaatatggtcacacaactaaaatgtacgtgaccattatttttc 42481369  T
Q  149 cacttagttaatcaaataaattttagaaaaatagtggtcatgtaactnnnnnnntgtgattacacagactatatatttggttaactattt 238  Q
     |||||||||| |||||||||| |  ||||||| |||||||||||||       ||||||||| |||||||||||| |||||||||||||    
T  42481370 tacttagttaaccaaataaattctgaaaaaataatggtcatgtaactaaaaaaatgtgattactcagactatatatctggttaactattt 42481459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 195
Target Start/End: Complemental strand, 4169214 - 4169098
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| |||||||||||||||||||||| |||| || ||||||||||||  |||| || ||||||| || |||||||| |||||||||| |  ||||    
T  4169214 ttgcgtgaccactatttagaagctgaaaaatgtggtaacgcaactaaaatgtgcgtgaccactatttttccatttagttaaccaaataaattctgaaaaa 4169115  T
Q  179 atagtggtcatgtaact 195  Q
    ||||| |||||| ||||    
T  4169114 atagtagtcatgcaact 4169098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 31545625 - 31545725
Alignment:
Q  88 cactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtc 187  Q
    |||||||||||||||||||||| ||||||||||||||||||||   ||| || |||||||  ||||||||||  ||||||||| | ||||||||||||||    
T  31545625 cactatttagaagctgaaaaatgtggtcacacaactaaaatgtgcatgaccactatttttctacttagttaacaaaataaattctggaaaaatagtggtc 31545724  T
Q  188 a 188  Q
    |    
T  31545725 a 31545725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 44080257 - 44080364
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| ||||||||||||| |||||||| |||||||| |||||||||||  |||  || ||||||| ||||||||||| |||| ||||||| |||||    
T  44080257 ttgcgtgaccactatttagaagttgaaaaatgtggtcaca-aactaaaatgtgcgtgcccactatttttccacttagttaaccaaaaaaattttggaaaa 44080355  T
Q  179 atagtggtc 187  Q
    |||||||||    
T  44080356 atagtggtc 44080364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 189
Target Start/End: Complemental strand, 1705779 - 1705669
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| |||||||||||||||||||||||||||||  |||||||||||   |||| || ||||||| | ||||||||| ||||||| || | |||||    
T  1705779 ttgcgtgaccactatttagaagctgaaaaatatggtcatgcaactaaaatgcgcgtgaccactatttttccccttagttaaccaaataatttctggaaaa 1705680  T
Q  179 atagtggtcat 189  Q
     ||||||||||    
T  1705679 ctagtggtcat 1705669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 42638065 - 42637956
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| |||||||||||||||||||||| ||||||| |||||||||||   || | || |||||||  |||||||||| |||||||||| |  ||||    
T  42638065 ttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtaaccactatttttcaacttagttaaccaaataaattctgaaaaa 42637966  T
Q  179 atagtggtca 188  Q
    ||||||||||    
T  42637965 atagtggtca 42637956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 3823651 - 3823761
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaa--tatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaa 176  Q
    |||||||| ||||||||| |||||||||||  ||||||||| |||||||||||  ||||| || | ||||| ||||||||||| |||||||||| | |||    
T  3823651 ttgcgtgaccactatttataagctgaaaaaaatatggtcacgcaactaaaatgcgtgtgaccact-tttttccacttagttaaccaaataaattatggaa 3823749  T
Q  177 aaatagtggtca 188  Q
    ||||||||||||    
T  3823750 aaatagtggtca 3823761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 23163349 - 23163404
Alignment:
Q  99 agctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcactta 154  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  23163349 agctgaaaaatatggtcacacaactaaaatgcacgtgatcattattttttcactta 23163404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 170
Target Start/End: Original strand, 5341877 - 5341967
Alignment:
Q  80 tgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaatt 170  Q
    ||||||| ||||||||||||| |||||||| |||||| |||||||||||  || ||| || ||||||| ||||||||||| ||||||||||    
T  5341877 tgcgtgaccactatttagaagttgaaaaatgtggtcatacaactaaaatacatatgaccactatttttccacttagttaaccaaataaatt 5341967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 27335479 - 27335402
Alignment:
Q  92 atttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaat 169  Q
    |||||||||||||||||| ||||||||||||||||||  | |||| || ||||||| ||||||||||| |||||||||    
T  27335479 atttagaagctgaaaaatgtggtcacacaactaaaatacacgtgaccactatttttccacttagttaaccaaataaat 27335402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 3785965 - 3786071
Alignment:
Q  82 cgtgatcactatttagaagctgaaaaa-tatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaat 180  Q
    ||||| ||||||||| ||||||||||| ||||||||| |||||||||||   |||| || | ||||| ||||||||||| |||||||||| | |||||||    
T  3785965 cgtgaccactatttataagctgaaaaaatatggtcacgcaactaaaatgcgcgtgaccact-tttttccacttagttaaccaaataaattatggaaaaat 3786063  T
Q  181 agtggtca 188  Q
    ||||||||    
T  3786064 agtggtca 3786071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 13358189 - 13358108
Alignment:
Q  91 tatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaatttt 172  Q
    ||||||||||||||||||||||||||||||| |||||||   || | || ||||||| ||| ||||||| ||||||||||||    
T  13358189 tatttagaagctgaaaaatatggtcacacaattaaaatgcgcgttaccactatttttccacatagttaaccaaataaatttt 13358108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 22432330 - 22432446
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||  ||||||||| |||||||||||| ||||||  |||||||||||  ||||  || ||||||| ||| ||||| | |||||||||| |  ||||    
T  22432330 ttgcgtgtccactatttaaaagctgaaaaatgtggtcaatcaactaaaatgcgtgtgtccactatttttccacatagttgaccaaataaattatgaaaaa 22432429  T
Q  179 atagtggtcatgtaact 195  Q
    |||||||||||| ||||    
T  22432430 atagtggtcatgcaact 22432446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 26308740 - 26308640
Alignment:
Q  88 cactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtc 187  Q
    |||||||||||||||||| ||| ||||||| ||| |||||||   |||| || ||||||| |||||| |||| |||||||||| | ||||| ||||||||    
T  26308740 cactatttagaagctgaataatgtggtcacgcaattaaaatgcgcgtgaccactatttttccacttacttaaccaaataaattctggaaaattagtggtc 26308641  T
Q  188 a 188  Q
    |    
T  26308640 a 26308640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 27079380 - 27079301
Alignment:
Q  104 aaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagt 183  Q
    |||||| |||||||  | ||||||||   |||| ||| |||||| |||||||||||||||||||||| ||||||||||||    
T  27079380 aaaaatgtggtcacgtagctaaaatgcgcgtgaccatcatttttccacttagttaatcaaataaattatagaaaaatagt 27079301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 27085177 - 27085098
Alignment:
Q  104 aaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagt 183  Q
    |||||| |||||||  | ||||||||   |||| ||| |||||| |||||||||||||||||||||| ||||||||||||    
T  27085177 aaaaatgtggtcacgtagctaaaatgcgcgtgaccatcatttttccacttagttaatcaaataaattatagaaaaatagt 27085098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 190
Target Start/End: Original strand, 27707698 - 27707784
Alignment:
Q  104 aaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtcatg 190  Q
    |||||| ||||| ||||||||||||||   ||| || |||||||||||||  |||| |||||||||| | |||||||||||| ||||    
T  27707698 aaaaatgtggtcgcacaactaaaatgtgcatgaccactattttttcacttgattaaccaaataaattctggaaaaatagtggacatg 27707784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 11501310 - 11501375
Alignment:
Q  119 caactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtg 184  Q
    ||||||||||||  |||| || ||||||| || |||||||| ||||||||||||| ||||||||||    
T  11501310 caactaaaatgtgcgtgaccactatttttccaattagttaaccaaataaattttaaaaaaatagtg 11501375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 19624317 - 19624414
Alignment:
Q  91 tatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtca 188  Q
    |||||| ||||| ||| || ||| ||| ||||||||||| | |||| || ||||||| ||||||||||| || ||||||| | ||||||| |||||||    
T  19624317 tatttataagctaaaatatgtggccacccaactaaaatgcacgtgaccactatttttccacttagttaaccacataaattctggaaaaattgtggtca 19624414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 9710832 - 9710742
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaatt 170  Q
    |||||||| ||||| |||||||||||||| | ||||||| |||||||| |  |  ||| || ||||||| ||||||||||| ||||||||||    
T  9710832 ttgcgtgaccactacttagaagctgaaaactgtggtcacgcaactaaa-tacacttgaccactatttttccacttagttaaccaaataaatt 9710742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 11509915 - 11509953
Alignment:
Q  91 tatttagaagctgaaaaatatggtcacacaactaaaatg 129  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  11509915 tatttagaagctgaaaaatgtggtcacgcaactaaaatg 11509953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 23163788 - 23163836
Alignment:
Q  111 tggtcacacaactaaaatgtatgtgatcattattttttcacttagttaa 159  Q
    ||||||| ||||||||||||| |||| || ||||| |||||||||||||    
T  23163788 tggtcacgcaactaaaatgtacgtgaccactatttcttcacttagttaa 23163836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 39126219 - 39126263
Alignment:
Q  135 gatcattattttttcacttagttaatcaaataaattttagaaaaa 179  Q
    ||||| ||||||| ||||||||||| ||||||||||||| |||||    
T  39126219 gatcactatttttccacttagttaaccaaataaattttaaaaaaa 39126263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 81 - 187
Target Start/End: Complemental strand, 3620867 - 3620761
Alignment:
Q  81 gcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaat 180  Q
    |||||||||||||||||||| |||||||| || ||||||||||||||| ||||||| || ||||||||||||||||||| |||||||||| |  ||||||    
T  3620867 gcgtgatcactatttagaagttgaaaaatgtgatcacacaactaaaatatatgtgaccactattttttcacttagttaaccaaataaattctgaaaaaat 3620768  T
Q  181 agtggtc 187  Q
    |||||||    
T  3620767 agtggtc 3620761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 10304809 - 10304700
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||||||   |||| || ||||||||||||||||||| |||||||||| | |||||    
T  10304809 ttgcgtgatcactatttagaagcagaaaaatacggtcacgcaactaaaatgcgcgtgaccactattttttcacttagttaaccaaataaattctggaaaa 10304710  T
Q  179 atagtggtca 188  Q
    | ||||||||    
T  10304709 aaagtggtca 10304700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 79 - 235
Target Start/End: Original strand, 3222431 - 3222588
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| ||||||||| | ||||||||||  |||||| ||||||||||||| |||| || ||||||| ||||||||||| |||||||||| | |||||    
T  3222431 ttgcgtgaccactatttaaatgctgaaaaatgcggtcacgcaactaaaatgtacgtgaccactatttttccacttagttaaccaaataaattctggaaaa 3222530  T
Q  179 -atagtggtcatgtaactnnnnnnntgtgattacacagactatatatttggttaacta 235  Q
     |||||||||| ||||||       |||| | |||||||| ||||||||| |||||||    
T  3222531 tatagtggtcacgtaactagaaaaatgtggtcacacagaccatatatttgattaacta 3222588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 235
Target Start/End: Complemental strand, 138820 - 138668
Alignment:
Q  83 gtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatag 182  Q
    |||| |||||||||||||||||||||| ||||||| |||||||| |||  | || || ||||||| |||||||| || |||||||||| |  ||||||||    
T  138820 gtgaccactatttagaagctgaaaaatgtggtcacgcaactaaattgtgcgcgaccactatttttccacttagtcaaccaaataaattctgaaaaaatag 138721  T
Q  183 tggtcatgtaactnnnnnnntgtgattacacagactatatatttggttaacta 235  Q
    |||||| | ||||       ||||   |||||||| |||||||||||||||||    
T  138720 tggtcacgcaactaagaaaatgtggccacacagaccatatatttggttaacta 138668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 235
Target Start/End: Complemental strand, 146841 - 146689
Alignment:
Q  83 gtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatag 182  Q
    |||| |||||||||||||||||||||| ||||||| |||||||| |||  | || || ||||||| |||||||| || |||||||||| |  ||||||||    
T  146841 gtgaccactatttagaagctgaaaaatgtggtcacgcaactaaattgtgcgcgaccactatttttccacttagtcaaccaaataaattctgaaaaaatag 146742  T
Q  183 tggtcatgtaactnnnnnnntgtgattacacagactatatatttggttaacta 235  Q
    |||||| | ||||       ||||   |||||||| |||||||||||||||||    
T  146741 tggtcacgcaactaagaaaatgtggccacacagaccatatatttggttaacta 146689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 33815125 - 33815034
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaatt 170  Q
    |||||||| |||||||||||||||||||||| ||||||| |||||||||||   |||| ||  |||||| ||||||||||| ||||||||||    
T  33815125 ttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccaccatttttccacttagttaaccaaataaatt 33815034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 22608360 - 22608469
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| |||||||||||||||||||||| ||||||  ||||||||||||   ||| || |||||||| | |||||||||||||||| || |  ||||    
T  22608360 ttgcgtgaccactatttagaagctgaaaaatgtggtcatgcaactaaaatgtgcatgaccactattttttgaattagttaatcaaataatttctgaaaaa 22608459  T
Q  179 atagtggtca 188  Q
     |||||||||    
T  22608460 ttagtggtca 22608469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 9068415 - 9068514
Alignment:
Q  88 cactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtc 187  Q
    ||||||||| |||||||||||| |||||||||| ||||||||   ||||| | ||||||| ||||||| ||| ||||||| || | ||||||||||||||    
T  9068415 cactatttaaaagctgaaaaatgtggtcacacatctaaaatgcgcgtgattactatttttccacttag-taaacaaataagttctggaaaaatagtggtc 9068513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 2834974 - 2835069
Alignment:
Q  91 tatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggt 186  Q
    |||||| |||||||||||||||||||  ||||||||||    |||| |||||||||| ||||||| |||  ||||||||| | |||||||||||||    
T  2834974 tatttaaaagctgaaaaatatggtcatgcaactaaaatacgcgtgaccattatttttccacttagctaactaaataaattatggaaaaatagtggt 2835069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 24386321 - 24386266
Alignment:
Q  133 gtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtca 188  Q
    ||||||| || |||||||||||||||| ||||||||||  |||| |||||||||||    
T  24386321 gtgatcactactttttcacttagttaaccaaataaattcaagaataatagtggtca 24386266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 2430654 - 2430600
Alignment:
Q  141 tattttttcacttagttaatcaaataaattttagaaaaatagtggtcatgtaact 195  Q
    ||||||| ||||||||||| |||||||||| |  |||||||||||||||| ||||    
T  2430654 tatttttccacttagttaaccaaataaattctgaaaaaatagtggtcatgcaact 2430600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 9474646 - 9474718
Alignment:
Q  95 tagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaa 168  Q
    |||||||| |||||| |||||||  || |||||||  ||||| || ||||||||||||||||||| ||||||||    
T  9474646 tagaagctaaaaaatgtggtcacgaaa-taaaatgcgtgtgaccactattttttcacttagttaaccaaataaa 9474718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 79 - 234
Target Start/End: Complemental strand, 1400883 - 1400728
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| |||||||||||||||||||||| |||||||||||| ||||||   ||||||| ||||||| ||||||||||| |||||||||| | |||||    
T  1400883 ttgcgtgaccactatttagaagctgaaaaatgtggtcacacaacaaaaatgcgcgtgatcactatttttccacttagttaaccaaataaattatggaaaa 1400784  T
Q  179 atagtggtcatgtaactnnnnnnntgtgattacacagactatatatttggttaact 234  Q
    |||||||||| | ||||       |||| | ||||| || ||||||||||||||||    
T  1400783 atagtggtcacgcaacttaaaaaatgtggtcacacataccatatatttggttaact 1400728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 30906157 - 30906051
Alignment:
Q  82 cgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaata 181  Q
    ||||| ||||||||| | |||||||||| ||||||| |||||||||||   |||| || ||||||| ||||||||||| |||||||||| | |||| |||    
T  30906157 cgtgaccactatttaaatgctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttccacttagttaagcaaataaattatggaaacata 30906058  T
Q  182 gtggtca 188  Q
    |||||||    
T  30906057 gtggtca 30906051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 43900532 - 43900637
Alignment:
Q  83 gtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatag 182  Q
    |||| |||||||||||||||||||||| ||||||| ||||||||||| | |||| || |||||||  | |||||||| |||||||||| |  ||||||||    
T  43900532 gtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttctatttagttaaccaaataaattctgaaaaaatag 43900631  T
Q  183 tggtca 188  Q
     |||||    
T  43900632 gggtca 43900637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 45305967 - 45306068
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| ||| ||||| |||||||||||| ||| ||| ||||||||||||  |||| || ||||||| ||||||||||| | |||||||| || ||||    
T  45305967 ttgcgtgaccac-atttaaaagctgaaaaatgtggccacgcaactaaaatgtgcgtgaccactatttttccacttagttaaccgaataaattctaaaaaa 45306065  T
Q  179 ata 181  Q
    |||    
T  45306066 ata 45306068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 33667328 - 33667424
Alignment:
Q  92 atttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtca 188  Q
    ||||||||| |||||||| ||||||| ||| ||||||||  || | || ||||||| ||||||||||| |||||| ||| |  ||||||||||||||    
T  33667328 atttagaagttgaaaaatgtggtcacgcaattaaaatgtgcgtaaccactatttttccacttagttaaccaaatatattctgaaaaaatagtggtca 33667424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 231
Target Start/End: Complemental strand, 28527431 - 28527280
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| ||  |||||||||||| ||||| | |||||  |||||| |||  ||||| || ||||||| || |||||||| |||||||||| | |||||    
T  28527431 ttgcgtgaccataatttagaagctggaaaatgttgtcacg-aactaacatgcgtgtgaccactatttttccaattagttaaccaaataaattctggaaaa 28527333  T
Q  179 atagtggtcatgtaactnnnnnnntgtgattacacagactatatatttggtta 231  Q
    |||||||||| | ||||       |||| | |||||||| |||||||||||||    
T  28527332 atagtggtcacgcaactaaaaaaatgtggtcacacagaccatatatttggtta 28527280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 7378564 - 7378470
Alignment:
Q  92 atttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtca 188  Q
    ||||||||||| ||||||||||| || |||||||||||| ||||| || |||| || |||||| |||| | | ||||||||| ||||||||| ||||    
T  7378564 atttagaagct-aaaaatatggtgacgcaactaaaatgtgtgtgaccactattattccacttaattaa-ccattaaattttaaaaaaatagtagtca 7378470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 234
Target Start/End: Original strand, 21589627 - 21589778
Alignment:
Q  83 gtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatag 182  Q
    ||||||||||||||||||||||||||| ||||||  |||||||||||  ||||| || ||||||| |||||| |||||||||||| || | |||||||||    
T  21589627 gtgatcactatttagaagctgaaaaatgtggtcatgcaactaaaatgcgtgtgaccactatttttccacttaattaatcaaataagttctggaaaaatag 21589726  T
Q  183 tggtcatgtaactnnnnnnntgtgattacacagactatatatttggttaact 234  Q
    |||||||| ||||       |||| | |||||||| |||||||||| |||||    
T  21589727 tggtcatgcaactaaaaaaatgtggtcacacagaccatatatttggataact 21589778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 31303453 - 31303562
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| |||||||||||||||||||||| ||||||  ||||||||||||  |||| || ||||||| ||||||||||| |||||||||| | ||||     
T  31303453 ttgcgtgaccactatttagaagctgaaaaatgtggtcatgcaactaaaatgtgcgtgaccactatttttccacttagttaaccaaataaattctggaaac 31303552  T
Q  179 atagtggtca 188  Q
    ||||||||||    
T  31303553 atagtggtca 31303562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 22740756 - 22740659
Alignment:
Q  91 tatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtca 188  Q
    |||||| |||||||||||||||||||| |||||||||| |  ||||||||||||||| ||||||||||| |||||||||| |  ||||||||| ||||    
T  22740756 tatttaaaagctgaaaaatatggtcacgcaactaaaatatgcgtgatcattatttttccacttagttaaccaaataaattctgaaaaaatagtagtca 22740659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 28805094 - 28804990
Alignment:
Q  83 gtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatag 182  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||   | || || ||||||| ||||||||||| |||||||||| | |||| ||||    
T  28805094 gtgatcactatttagaagctgaaaaatgtggtcacacaaccaaaatgcgcg-gaccactatttttccacttagttaaccaaataaattatggaaatatag 28804996  T
Q  183 tggtca 188  Q
    ||||||    
T  28804995 tggtca 28804990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 195
Target Start/End: Complemental strand, 5083900 - 5083785
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| ||||||||||||| |||||||||||||||| ||||| |||||   |||| || |||||||  |||| |||||  ||||||||| |||||||    
T  5083900 ttgcgtgaccactatttagaagttgaaaaatatggtcacgcaact-aaatgcgggtgaccactatttttcaactttgttaacgaaataaattctagaaaa 5083802  T
Q  179 atagtggtcatgtaact 195  Q
    |||||||||| ||||||    
T  5083801 atagtggtcacgtaact 5083785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 18312837 - 18312935
Alignment:
Q  89 actatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtca 188  Q
    ||||||||||||||||||| | || |||| ||||||||||| |||||| || ||||||| ||||||||||| | |||||||| | |||||||||||||||    
T  18312837 actatttagaagctgaaaa-tgtgctcacgcaactaaaatgcatgtgaccactatttttccacttagttaacctaataaattcttgaaaaatagtggtca 18312935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 20556770 - 20556857
Alignment:
Q  83 gtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaatt 170  Q
    |||| |||||||||||||||||||||| ||||||| ||||||||||    |||| || ||||||| ||||||||||| ||||||||||    
T  20556770 gtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatacgcgtgaccaatatttttccacttagttaaccaaataaatt 20556857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 4290831 - 4290935
Alignment:
Q  83 gtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatag 182  Q
    |||| ||||||||||||| |||||||| ||||||| ||||| || |||  |||| || ||||||| ||||||||||| |||||||||| |  |||| |||    
T  4290831 gtgaccactatttagaagttgaaaaatgtggtcacgcaact-aagtgtgcgtgaccactatttttccacttagttaaccaaataaattctgaaaaactag 4290929  T
Q  183 tggtca 188  Q
    ||||||    
T  4290930 tggtca 4290935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 234
Target Start/End: Original strand, 21548464 - 21548607
Alignment:
Q  91 tatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtcatg 190  Q
    |||||| |||||||||||| ||||||| |||||  ||||   || | || | ||||| ||||||||||| |||||||||| | ||||||||||||||| |    
T  21548464 tatttaaaagctgaaaaatgtggtcacgcaactcgaatgcgcgtaaccactgtttttccacttagttaaccaaataaattctggaaaaatagtggtcacg 21548563  T
Q  191 taactnnnnnnntgtgattacacagactatatatttggttaact 234  Q
     ||||       | |||| |||||||| |||||||| |||||||    
T  21548564 caactaaacaaatatgatcacacagaccatatatttagttaact 21548607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 32964775 - 32964852
Alignment:
Q  92 atttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaat 169  Q
    |||||||||||||||||||||||||   |||||||||| | |||| || ||||||| |||||| |||| | |||||||    
T  32964775 atttagaagctgaaaaatatggtcatgtaactaaaatgcacgtgaccactatttttccacttaattaacctaataaat 32964852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 5174910 - 5174975
Alignment:
Q  123 taaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtca 188  Q
    ||||||||  |||| || ||||||| |||||||||||||||||||||| |  |||| |||||||||    
T  5174910 taaaatgtgcgtgaccactatttttacacttagttaatcaaataaattctgaaaaattagtggtca 5174975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 5322071 - 5321962
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    ||||||||||| |||||||||||||||||||||| |||| |||||||||||   |||| || ||||||| ||||||||||| |||||||||| || ||||    
T  5322071 ttgcgtgatcattatttagaagctgaaaaatatgatcacgcaactaaaatgcgcgtgaccactatttttccacttagttaaccaaataaattctaaaaaa 5321972  T
Q  179 atagtggtca 188  Q
    ||||||||||    
T  5321971 atagtggtca 5321962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 5573780 - 5573888
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| ||||||||||||| |||||||| ||||||   |||||||||| | |||| || ||||||| ||||||||||| |||||||||||| |||||    
T  5573780 ttgcgtgaccactatttagaagttgaaaaatgtggtcatggaactaaaatgcacgtgaccactatttttccacttagttaaccaaataaatttt-gaaaa 5573878  T
Q  179 atagtggtca 188  Q
    ||||||||||    
T  5573879 atagtggtca 5573888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 38606937 - 38606828
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||| | |||||||||||||||||||||| ||||||| |||| ||||||  ||||| || ||||||| ||||||||||| |||||||||| | ||||     
T  38606937 ttgcgttaccactatttagaagctgaaaaatgtggtcacgcaacgaaaatgcgtgtgaccactatttttccacttagttaaccaaataaattctggaaac 38606838  T
Q  179 atagtggtca 188  Q
    ||||||||||    
T  38606837 atagtggtca 38606828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 15714794 - 15714695
Alignment:
Q  89 actatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtca 188  Q
    |||||||| ||||||||||||||||||||  |||||||||||  |||| || ||||||| ||||||||||| |||||||||||   ||||||||||||||    
T  15714794 actatttaaaagctgaaaaatatggtcacgtaactaaaatgtccgtgaccactatttttccacttagttaaccaaataaatttcgaaaaaatagtggtca 15714695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 1241005 - 1240901
Alignment:
Q  83 gtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatag 182  Q
    |||| |||||||||||||||||||||| ||||||   |||||||||||  |||| || ||||||  ||||||||||| |||||||||| | |||||||||    
T  1241005 gtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgcgtgaccactattttcccacttagttaaccaaataaattatggaaaaatag 1240907  T
Q  183 tggtca 188  Q
    ||||||    
T  1240906 tggtca 1240901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 31273671 - 31273580
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaatt 170  Q
    |||||||| | |||||||||||||||||||||||||||  || |||||||| | |||| |  |||||||||||| |||||| ||||||||||    
T  31273671 ttgcgtgacccctatttagaagctgaaaaatatggtcatgcagctaaaatgcacgtgaacgctattttttcactaagttaaccaaataaatt 31273580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 167
Target Start/End: Complemental strand, 29367160 - 29367076
Alignment:
Q  83 gtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataa 167  Q
    |||| |||||||| ||||||||||||| ||||||| |||||||||||   |||| || ||||||| ||||||||||| |||||||    
T  29367160 gtgaccactattttgaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttccacttagttaaccaaataa 29367076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 32959563 - 32959628
Alignment:
Q  82 cgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttt 147  Q
    ||||| ||| ||| ||||||| ||||||||||||||||||||||||||| ||||| || |||||||    
T  32959563 cgtgaccaccattaagaagctaaaaaatatggtcacacaactaaaatgtgtgtgaccactattttt 32959628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 31596795 - 31596894
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||| | ||||||||||||| |||||||| |||||| |||||| |||||  ||| |||| ||||||| |||||| |||| |||||||||| | |||||    
T  31596795 ttgcgttaccactatttagaagatgaaaaatgtggtcagacaact-aaatgcgtgtaatcactatttttccacttaattaaccaaataaattatggaaaa 31596893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 1251585 - 1251477
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| ||||||||| || ||||||||| || |||   |||||||||||  | || || ||||||  ||||||||||| |||||||||| | |||||    
T  1251585 ttgcgtgaccactatttaaaacctgaaaaatgtgatcatg-aactaaaatgtgcgcgaccactattttcccacttagttaaccaaataaattatggaaaa 1251487  T
Q  179 atagtggtca 188  Q
    ||||||||||    
T  1251486 atagtggtca 1251477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 26493435 - 26493355
Alignment:
Q  89 actatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaatt 170  Q
    ||||||||||||||||||||| ||||||| |||||||| ||   ||||  | ||||||| || |||||||||||||||||||    
T  26493435 actatttagaagctgaaaaatgtggtcacgcaactaaa-tgcgcgtgacaactatttttccatttagttaatcaaataaatt 26493355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 24575954 - 24575907
Alignment:
Q  141 tattttttcacttagttaatcaaataaattttagaaaaatagtggtca 188  Q
    |||||||||||||| |||| |||||||||| | |||||||||||||||    
T  24575954 tattttttcacttatttaaccaaataaattctggaaaaatagtggtca 24575907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 26914746 - 26914684
Alignment:
Q  133 gtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtcatgtaact 195  Q
    |||| |||||||||| |||| | |||| |||||||||| | ||||||||||||||| ||||||    
T  26914746 gtgaccattatttttccactcaattaaccaaataaattcttgaaaaatagtggtcacgtaact 26914684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 33286217 - 33286263
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaa 125  Q
    |||||||| |||| ||||||||||||||||| ||||||| |||||||    
T  33286217 ttgcgtgaccactttttagaagctgaaaaatgtggtcacgcaactaa 33286263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 29677190 - 29677078
Alignment:
Q  83 gtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatag 182  Q
    |||| |||||||||||||||||||||| ||||||| ||||||||||||  |||| || ||||||| ||||||||||| |||||||||| |  ||||||||    
T  29677190 gtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgtgcgtgaccactatttttccacttagttaaccaaataaattctgaaaaaatag 29677091  T
Q  183 tggtcatgtaact 195  Q
    |||||||| ||||    
T  29677090 tggtcatgcaact 29677078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 34364243 - 34364340
Alignment:
Q  91 tatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtca 188  Q
    |||||||||||||||| || ||||||||||||||||||| | |||| ||  |||||||||||||||||| |||| ||||| | |||||||| ||||||    
T  34364243 tatttagaagctgaaacatgtggtcacacaactaaaatgaacgtgaccacaattttttcacttagttaaccaaaaaaattctggaaaaataatggtca 34364340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 38951906 - 38952016
Alignment:
Q  80 tgcgtgatcactatttagaagctgaaaaa--tatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaa 177  Q
    ||||||| |||||||||||| ||||||||  ||| ||||| |||||||||||  | ||| || |||||||  |||||||||| |||||||||||| || |    
T  38951906 tgcgtgaccactatttagaaactgaaaaaaatatagtcacgcaactaaaatgcgtctgaccactatttttctacttagttaaccaaataaattttggaga 38952005  T
Q  178 aatagtggtca 188  Q
    |||||||||||    
T  38952006 aatagtggtca 38952016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 42604227 - 42604323
Alignment:
Q  88 cactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtg 184  Q
    ||||||||||||||| |||| |||||||| ||||||||||||   |||| || ||||||| |||||||||||  ||||||||| |  ||||||||||    
T  42604227 cactatttagaagcttaaaagtatggtcatacaactaaaatgcgcgtgaccactatttttccacttagttaacgaaataaattctgaaaaaatagtg 42604323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 29167918 - 29167828
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaatt 170  Q
    |||||||| ||||||||||||||| |||||||||||||| ||| |||||||    ||| || ||||||| ||||||||||| ||||||||||    
T  29167918 ttgcgtgaccactatttagaagctaaaaaatatggtcacgcaa-taaaatgcgcatgaccactatttttccacttagttaaccaaataaatt 29167828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 2569970 - 2570017
Alignment:
Q  141 tattttttcacttagttaatcaaataaattttagaaaaatagtggtca 188  Q
    ||||||| ||||||||||| |||||||||| |||||||||||||||||    
T  2569970 tatttttccacttagttaaccaaataaattctagaaaaatagtggtca 2570017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 9468120 - 9468199
Alignment:
Q  91 tatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttt-tcacttagttaatcaaataaat 169  Q
    |||||| |||||| ||||| || |||||||||||||||||||||||  | |||||||  ||||||||||| |||||||||    
T  9468120 tatttaaaagctgtaaaatgtgatcacacaactaaaatgtatgtgactactatttttgccacttagttaaccaaataaat 9468199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 25238477 - 25238567
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaatt 170  Q
    |||||||| ||||||||||||||| |||||| |||||||  || ||||||||  || | || ||||||| ||||||||||| ||||||||||    
T  25238477 ttgcgtgaccactatttagaagctaaaaaatgtggtcacgtaa-taaaatgtgcgtaaccactatttttccacttagttaaccaaataaatt 25238567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 168
Target Start/End: Complemental strand, 517522 - 517433
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaa 168  Q
    |||||| | ||||||||||||| | ||||||||| |||| ||||||||||| |  |||  | |||||||| |||||||||| ||||||||    
T  517522 ttgcgtaaccactatttagaagttaaaaaatatgatcacgcaactaaaatgaacatgactactattttttaacttagttaaccaaataaa 517433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 35922732 - 35922848
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| |||||||||||||||||||||| ||||||| |||||||||||  | ||| || ||||||| || |||||||| |||||||||| |  ||||    
T  35922732 ttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgtatgaccactatttttccatttagttaaccaaataaattctgaaaaa 35922831  T
Q  179 atagtggtcatgtaact 195  Q
    |||||||||||| ||||    
T  35922832 atagtggtcatgcaact 35922848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 94 - 227
Target Start/End: Original strand, 42034771 - 42034904
Alignment:
Q  94 ttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtcatgtaa 193  Q
    |||||||||||||||| ||||||| ||||||||||| | |||| || ||||||| ||||||||||| |||||||||||| ||||| ||||||||| | ||    
T  42034771 ttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccacttagttaaccaaataaattttggaaaactagtggtcacgcaa 42034870  T
Q  194 ctnnnnnnntgtgattacacagactatatatttg 227  Q
    ||       |||||||||||| || |||||||||    
T  42034871 ctaaaaaaatgtgattacacataccatatatttg 42034904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 232
Target Start/End: Complemental strand, 33959088 - 33958936
Alignment:
Q  80 tgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaa 179  Q
    ||||||| |||||||||||| ||||||||||||||||| ||||||||||    || | || ||||||| ||||||||| | |||||||||| | ||||||    
T  33959088 tgcgtgaccactatttagaaactgaaaaatatggtcacgcaactaaaatccgagtaaccactatttttccacttagttgaccaaataaattctggaaaaa 33958989  T
Q  180 tagtggtcatgtaactnnnnnnntgtgattacacagactatatatttggttaa 232  Q
    | ||||||||| | ||       |||||||||| |||| ||||||||||||||    
T  33958988 ttgtggtcatgcagctaaaaaaatgtgattacatagaccatatatttggttaa 33958936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 13312609 - 13312707
Alignment:
Q  90 ctatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtca 188  Q
    |||||||||||||||||||| ||||||| |||||||||||   |||   | ||||||| ||||||||||| |||||||||| | |||||||||||||||    
T  13312609 ctatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtggcaactatttttccacttagttaaccaaataaattatggaaaaatagtggtca 13312707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 31189578 - 31189681
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||| |||| ||||||||||||||||||||| || |||| |||||||||||| ||||| || || |||| ||||| |||||||||||||||| | ||||     
T  31189578 ttgcatgattactatttagaagctgaaaaatgtgatcacgcaactaaaatgtttgtgaccacta-ttttccacttggttaatcaaataaattctggaaac 31189676  T
Q  179 atagt 183  Q
    |||||    
T  31189677 atagt 31189681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 22169457 - 22169566
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| ||||||||| ||| |||||||| ||||||| |||||||||||   |||| || |||||||  || ||||||| ||||||||||||  ||||    
T  22169457 ttgcgtgaccactatttataagttgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttcaacgtagttaaccaaataaattttgaaaaa 22169556  T
Q  179 atagtggtca 188  Q
    ||| ||||||    
T  22169557 ataatggtca 22169566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 36169442 - 36169394
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaa 127  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||    
T  36169442 ttgcgtgaccactatttagaagctgaaaaatatggtcacgcaactaaaa 36169394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 19621550 - 19621477
Alignment:
Q  111 tggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtg 184  Q
    ||||||| ||||||||||||  |||| || ||||||| ||||||||||| |||||||||| | |||||||||||    
T  19621550 tggtcacgcaactaaaatgtgcgtgaccactatttttccacttagttaaccaaataaattctggaaaaatagtg 19621477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 38522076 - 38521968
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||| ||| |||||||||||||||||||||| ||||||| | | |||||||   |||| || ||||||| |||||||||||  ||||||||| |||||||    
T  38522076 ttgcatgaccactatttagaagctgaaaaatgtggtcacgcga-taaaatgcgcgtgaccactatttttacacttagttaactaaataaattctagaaaa 38521978  T
Q  179 atagtggtca 188  Q
     || ||||||    
T  38521977 ctaatggtca 38521968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 43461806 - 43461701
Alignment:
Q  83 gtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatag 182  Q
    |||| ||||||||||||| ||||||||| |||||| ||||||||||  | || | || ||||||| |||||||| || |||||||||| |  ||||||||    
T  43461806 gtgaccactatttagaagttgaaaaatacggtcacgcaactaaaattcacgtaaccactatttttccacttagtaaaccaaataaattctgaaaaaatag 43461707  T
Q  183 tggtca 188  Q
    | ||||    
T  43461706 ttgtca 43461701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 7156105 - 7156182
Alignment:
Q  92 atttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaat 169  Q
    |||||||||||||||||| || || | |||||||||| |  |||| |||||||||| |||||| |||| |||||||||    
T  7156105 atttagaagctgaaaaatgtgatcgcgcaactaaaatatgcgtgaccattatttttccacttaattaaccaaataaat 7156182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 43262771 - 43262708
Alignment:
Q  103 gaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaata 166  Q
    ||||||| |||||||||||||||||||   |||| || ||||||| ||||||||||| ||||||    
T  43262771 gaaaaatgtggtcacacaactaaaatgcgcgtgaccactatttttccacttagttaaccaaata 43262708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 30704476 - 30704398
Alignment:
Q  92 atttagaagctgaaaaa-tatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaat 169  Q
    ||||| ||||||||||| | ||||| |||||||||||||   |||| || ||||||| ||||||||||| |||||||||    
T  30704476 atttaaaagctgaaaaaatgtggtcgcacaactaaaatgcgcgtgaccactatttttccacttagttaaccaaataaat 30704398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 33179867 - 33179759
Alignment:
Q  80 tgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaa 179  Q
    ||||||| ||||||||||||  |||||||| ||| |||||||||||||||  ||||| || ||||||| |||||||||||||||||||||| || ||||     
T  33179867 tgcgtgaccactatttagaaagtgaaaaatgtggccacacaactaaaatgcgtgtgaccactatttttccacttagttaatcaaataaattctaaaaaag 33179768  T
Q  180 tagtggtca 188  Q
    |||||||||    
T  33179767 tagtggtca 33179759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 33249725 - 33249616
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| ||||||||||||| |||||||| ||||||| ||  |||||||  ||||| || ||||||| ||| ||||||||||||||||||||  ||||    
T  33249725 ttgcgtgaccactatttagaaggtgaaaaatgtggtcacgcacataaaatgcgtgtgaccactatttttccacctagttaatcaaataaattttgaaaaa 33249626  T
Q  179 atagtggtca 188  Q
     |||||||||    
T  33249625 gtagtggtca 33249616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 1966941 - 1966833
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| |||||||||||||||||||||| ||||||| ||||| |||||   |||| || ||||||| |||||| |||| |||||||||| | |||||    
T  1966941 ttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaact-aaatgcgcgtgaccactatttttccacttaattaaccaaataaattctggaaaa 1966843  T
Q  179 atagtggtca 188  Q
     |||||||||    
T  1966842 ctagtggtca 1966833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 16583596 - 16583705
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| ||||||||||||||||||||||||| |||  |||||||||||   |||| || ||||||| |||||| |||| |||||||||| | | |||    
T  16583596 ttgcgtgaccactatttagaagctgaaaaatatgatcatgcaactaaaatgcgcgtgaccactatttttccacttaattaaccaaataaattatggtaaa 16583695  T
Q  179 atagtggtca 188  Q
    ||||| ||||    
T  16583696 atagtagtca 16583705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 17633427 - 17633339
Alignment:
Q  102 tgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtcatg 190  Q
    |||||||||||||||| |||||||||||   |||| || |||||||| |||||||||| |||||||||||| || |||| |||||||||    
T  17633427 tgaaaaatatggtcacgcaactaaaatgcgcgtgaccactattttttaacttagttaaccaaataaattttggacaaattgtggtcatg 17633339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 35544519 - 35544425
Alignment:
Q  88 cactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagt 183  Q
    |||||||||||||||||||||| ||||||| ||||| |||||  |||||||| ||||||| |||||| ||||  ||||||||||| || |||||||    
T  35544519 cactatttagaagctgaaaaatgtggtcacgcaact-aaatgcgtgtgatcactatttttccacttaattaactaaataaattttggataaatagt 35544425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 24669197 - 24669274
Alignment:
Q  92 atttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaat 169  Q
    |||||||| || |||||||||||||| ||||||||||   ||||| || ||||||||||||||||||| |||||||||    
T  24669197 atttagaaactcaaaaatatggtcacgcaactaaaattcgtgtgaccactattttttcacttagttaaccaaataaat 24669274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 9809074 - 9809183
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| |||||||||||||||||||||| | ||||| ||||| |||||   |||| || ||||||| || |||||||| ||||||| || | |||||    
T  9809074 ttgcgtgaccactatttagaagctgaaaaatgtagtcacgcaactcaaatgcgcgtgaccactatttttccatttagttaaccaaataatttatggaaaa 9809173  T
Q  179 atagtggtca 188  Q
    | | ||||||    
T  9809174 aaaatggtca 9809183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 8740899 - 8740796
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    ||||||||||||||||||||||||||||||| |||||||   |||||||||   |||| || |||||||  ||||||||||  ||||||||| | |||||    
T  8740899 ttgcgtgatcactatttagaagctgaaaaatgtggtcac-gtactaaaatgcgcgtgaccactatttttctacttagttaactaaataaattatggaaaa 8740801  T
Q  179 atagt 183  Q
     ||||    
T  8740800 gtagt 8740796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 14351071 - 14351171
Alignment:
Q  88 cactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaaatagtggtc 187  Q
    |||||||| |||||| ||| || || |||| ||||||||||||   ||| || ||||||| ||||||||||| ||||||||||||   ||||||||||||    
T  14351071 cactattttgaagctaaaagatgtgatcacgcaactaaaatgtccatgaccactatttttccacttagttaaccaaataaattttgtcaaaatagtggtc 14351170  T
Q  188 a 188  Q
    |    
T  14351171 a 14351171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 55666934 - 55666844
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaatt 170  Q
    |||||||| || |||||| |||||||||||  |||||||  |||||||||||  |||| || ||||||| ||||||||||| ||||||||||    
T  55666934 ttgcgtgaccattatttataagctgaaaaacgtggtcacg-aactaaaatgttcgtgaccactatttttccacttagttaagcaaataaatt 55666844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 167
Target Start/End: Original strand, 9810760 - 9810848
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataa 167  Q
    |||||||| ||||||||||||||| |||||| | ||||| ||||| ||||||  |||| |  ||||||| || |||||||| |||||||    
T  9810760 ttgcgtgaccactatttagaagctaaaaaatgtagtcacgcaactcaaatgtgcgtgacctctatttttccatttagttaaccaaataa 9810848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 20874833 - 20874880
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaa 126  Q
    ||||||||||||| ||||||||||||||||| |||| || ||||||||    
T  20874833 ttgcgtgatcactttttagaagctgaaaaatgtggtaacgcaactaaa 20874880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 19596794 - 19596832
Alignment:
Q  91 tatttagaagctgaaaaatatggtcacacaactaaaatg 129  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  19596794 tatttagaagctgaaaaatgtggtcacgcaactaaaatg 19596832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 234
Target Start/End: Complemental strand, 318 - 163
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaattttagaaaa 178  Q
    |||||||| |||||||||||||||||||||| ||||||| |||||||||||    ||| || ||||||| |||||| |||  ||||||| ||||  ||||    
T  318 ttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcatgaccactatttttccacttacttatccaaataatttttgaaaaa 219  T
Q  179 atagtggtcatgtaactnnnnnnntgtgattacacagactatatatttggttaact 234  Q
     ||||||||| | ||||       |||||| |||||| | ||||||||||||||||    
T  218 ttagtggtcacgcaactaaaacaatgtgatcacacagtccatatatttggttaact 163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 112158 - 112235
Alignment:
Q  92 atttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaat 169  Q
    |||||||||||||||||  ||||||| ||| ||||||| | |||| || ||||||| |||||||||||  ||||||||    
T  112158 atttagaagctgaaaaacgtggtcacgcaattaaaatgcacgtgaccactatttttccacttagttaactaaataaat 112235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 10724 - 10633
Alignment:
Q  79 ttgcgtgatcactatttagaagctgaaaaatatggtcacacaactaaaatgtatgtgatcattattttttcacttagttaatcaaataaatt 170  Q
    |||| ||| ||||||||| ||  | |||||| ||||||| ||||||||||    |||| |||||||||| ||||||||||| ||||||||||    
T  10724 ttgcatgaccactatttaaaaaataaaaaatgtggtcacgcaactaaaatacccgtgaccattatttttccacttagttaaccaaataaatt 10633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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