View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7902_low_2 (Length: 582)
Name: NF7902_low_2
Description: NF7902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7902_low_2 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 93 - 564
Target Start/End: Complemental strand, 154527 - 154056
Alignment:
| Q |
93 |
cagcgctctaacggctgcccttatacgtacctgaaaacgccaaaggaggtcaccacaggtcttaacattgaagcggttattatagaaattcttacgagct |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
154527 |
cagcgctctaacggctgcccttatacgtacctgaaaacgccaaaggagatcaccacaggtcttaacattgaagcggttattatagaaattcttacgagct |
154428 |
T |
|
| Q |
193 |
tcttcaacttgtgctctctcttcttcactacctgcttctggatcatactcccatgtttgtcttcccacaaaattatttgtgctgaataagtatggctcat |
292 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
154427 |
tcttcaacttgtgctctttcttcttcactacctgcttctggatcatactcccatgtttgtcttcccacaaaactatttgtgctgaataagtatggctcat |
154328 |
T |
|
| Q |
293 |
tcccaccttctgctatcttcagcttccacatcttcttctatatataattcgatgtagaattaatgttgggttaagaagctaaaaaggaaaagaaaactaa |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
154327 |
tcccaccttctgctatcttcagcttccacatcttcttctatatataattcgatgtagaattaatgttgggttaagaagctaaaaagaaaaagaaaactaa |
154228 |
T |
|
| Q |
393 |
ttataatttaattcatgatttatcaataaatacaagttttagagcaggtggtgatattgctagcaagtgcttttgtatatatatgtgaggaaagaaagat |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
154227 |
ttataatttaattcatgatttatcaataaatacaagttttagagtaggtggtgatattgctagcaagtgcttttgtatatatatgtgaggaaagaaagat |
154128 |
T |
|
| Q |
493 |
cccattgccgctagcattattaattttttgatgtaccggccatgggatcagcaatcagtgcaacccatgtca |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
154127 |
cccattgccgctagcattattaattttttgatgtaccggccatgggatcagctctcagtgcaacccatgtca |
154056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 114 - 326
Target Start/End: Original strand, 10307655 - 10307867
Alignment:
| Q |
114 |
tatacgtacctgaaaacgccaaaggaggtcaccacaggtcttaacattgaagcggttattatagaaattcttacgagcttcttcaacttgtgctctctct |
213 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
10307655 |
tataagtacctgaaaacgcgaaaggaggtcaccacaggtcttaaccttgaaacggttattatagaaattcttacgaacttcttcaacttgagctctctct |
10307754 |
T |
|
| Q |
214 |
tcttcactacctgcttctggatcatactcccatgtttgtcttcccacaaaattatttgtgctgaataagtatggctcattcccaccttctgctatcttca |
313 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| || |||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
10307755 |
tcttcactacctgcttctggatcctattcccatgtttggctccccacagaattgtttgtgctgaataagtatgggtcattcccaccttctgctatcttca |
10307854 |
T |
|
| Q |
314 |
gcttccacatctt |
326 |
Q |
| |
|
||||||||||||| |
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|
| T |
10307855 |
gcttccacatctt |
10307867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 119 - 326
Target Start/End: Complemental strand, 100622 - 100415
Alignment:
| Q |
119 |
gtacctgaaaacgccaaaggaggtcaccacaggtcttaacattgaagcggttattatagaaattcttacgagcttcttcaacttgtgctctctcttcttc |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||| || ||||| | ||| | |||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
100622 |
gtacctgaaaacgccataggaggtcaccacagggcttgaccttgaatctgttgtcatagaaattcttacgagcttcttcaacttgtgctctttcttcttc |
100523 |
T |
|
| Q |
219 |
actacctgcttctggatcatactcccatgtttgtcttcccacaaaattatttgtgctgaataagtatggctcattcccaccttctgctatcttcagcttc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | |||||||||||| |
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|
| T |
100522 |
actacctgcttctggatcatactcccatgtttgtcttcccacaaaattatttgtgctgaataagtatggctcattctttccctctccaatcttcagcttc |
100423 |
T |
|
| Q |
319 |
cacatctt |
326 |
Q |
| |
|
|||||||| |
|
|
| T |
100422 |
cacatctt |
100415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 119 - 326
Target Start/End: Original strand, 102162 - 102369
Alignment:
| Q |
119 |
gtacctgaaaacgccaaaggaggtcaccacaggtcttaacattgaagcggttattatagaaattcttacgagcttcttcaacttgtgctctctcttcttc |
218 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||| ||| || ||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
102162 |
gtacctgaaaacgccagaggagatcaccgcagggcttgactttgaagcggttgttatagaaattcttacgagcttcttcaacttgggccctctcttcttc |
102261 |
T |
|
| Q |
219 |
actacctgcttctggatcatactcccatgtttgtcttcccacaaaattatttgtgctgaataagtatggctcattcccaccttctgctatcttcagcttc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | ||||||||||||||||||||||||| || |
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|
| T |
102262 |
actacctgcttctggatcatactcccatgtttgtcttcccacaaagttatttgtactgaataagtatgggttattcccaccttctgctatcttcagcctc |
102361 |
T |
|
| Q |
319 |
cacatctt |
326 |
Q |
| |
|
|||||||| |
|
|
| T |
102362 |
cacatctt |
102369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 119 - 326
Target Start/End: Complemental strand, 13041421 - 13041214
Alignment:
| Q |
119 |
gtacctgaaaacgccaaaggaggtcaccacaggtcttaacattgaagcggttattatagaaattcttacgagcttcttcaacttgtgctctctcttcttc |
218 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||| || || |||||||| ||||| ||||||| ||||||||||||||||||||||||||| || |
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|
| T |
13041421 |
gtacctgaaaacgccaaaggaggtcactacatagcttgactttaaagcggttgttataaaaattctgacgagcttcttcaacttgtgctctctcctccaa |
13041322 |
T |
|
| Q |
219 |
actacctgcttctggatcatactcccatgtttgtcttcccacaaaattatttgtgctgaataagtatggctcattcccaccttctgctatcttcagcttc |
318 |
Q |
| |
|
| ||||||||| |||||||||||||||| |||||||||| ||||| || ||||||||||||| |||||| ||||| ||||| ||||||||||||| | || |
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|
| T |
13041321 |
agtacctgcttttggatcatactcccatatttgtcttcctacaaagttgtttgtgctgaatatgtatgggtcattaccaccatctgctatcttcaacctc |
13041222 |
T |
|
| Q |
319 |
cacatctt |
326 |
Q |
| |
|
|||||||| |
|
|
| T |
13041221 |
cacatctt |
13041214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 120 - 326
Target Start/End: Original strand, 5700911 - 5701117
Alignment:
| Q |
120 |
tacctgaaaacgccaaaggaggtcaccacaggtcttaacattgaagcggttattatagaaattcttacgagcttcttcaacttgtgctctctcttcttca |
219 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| |||||| ||||| || || |||||||||| | ||| |||| ||||||||| |||||||| || | |
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|
| T |
5700911 |
tacctgaaaacgccaaagaaggtcactgcagggcttaactttgaaacgattgttatagaaatgttgacgtgctttttcaacttgagctctctcctcagaa |
5701010 |
T |
|
| Q |
220 |
ctacctgcttctggatcatactcccatgtttgtcttcccacaaaattatttgtgctgaataagtatggctcattcccaccttctgctatcttcagcttcc |
319 |
Q |
| |
|
|||| || | ||||||| |||||||||| || || || | ||| |||||||| ||||||| |||||| |||||||| || ||||||||||||||| ||| |
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|
| T |
5701011 |
gtaccagcatttggatcaaactcccatgtctgcctccctaaaaagttatttgtactgaatatgtatggatcattccccccatctgctatcttcagcctcc |
5701110 |
T |
|
| Q |
320 |
acatctt |
326 |
Q |
| |
|
||||||| |
|
|
| T |
5701111 |
acatctt |
5701117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 120 - 326
Target Start/End: Original strand, 5680858 - 5681064
Alignment:
| Q |
120 |
tacctgaaaacgccaaaggaggtcaccacaggtcttaacattgaagcggttattatagaaattcttacgagcttcttcaacttgtgctctctcttcttca |
219 |
Q |
| |
|
||||||||| |||||||| ||||||| |||| |||||| ||||| || || | |||||||| | ||| |||| ||||||||| | |||||| || | |
|
|
| T |
5680858 |
tacctgaaagcgccaaagaaggtcactgcagggcttaactttgaaacgattgtcatagaaatgttgacgtgctttttcaacttgagatctctcctcagga |
5680957 |
T |
|
| Q |
220 |
ctacctgcttctggatcatactcccatgtttgtcttcccacaaaattatttgtgctgaataagtatggctcattcccaccttctgctatcttcagcttcc |
319 |
Q |
| |
|
|||| || || | |||| |||||||||| || || |||||||| |||||||| ||||||| |||||| || |||||||| ||||||||||||||| ||| |
|
|
| T |
5680958 |
gtaccagcatcagcatcaaactcccatgtctgcctccccacaaagttatttgtactgaatatgtatggatccttcccaccatctgctatcttcagcctcc |
5681057 |
T |
|
| Q |
320 |
acatctt |
326 |
Q |
| |
|
||||||| |
|
|
| T |
5681058 |
acatctt |
5681064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 326
Target Start/End: Original strand, 5731500 - 5731706
Alignment:
| Q |
120 |
tacctgaaaacgccaaaggaggtcaccacaggtcttaacattgaagcggttattatagaaattcttacgagcttcttcaacttgtgctctctcttcttca |
219 |
Q |
| |
|
||||||||| |||||||| ||||||| |||| ||||| ||||| || || |||||||||| | ||| |||| ||||||||| |||||||| || | |
|
|
| T |
5731500 |
tacctgaaagcgccaaagaaggtcactgcagggtttaactttgaaacgattgttatagaaatgttgacgtgctttttcaacttgagctctctcctcagaa |
5731599 |
T |
|
| Q |
220 |
ctacctgcttctggatcatactcccatgtttgtcttcccacaaaattatttgtgctgaataagtatggctcattcccaccttctgctatcttcagcttcc |
319 |
Q |
| |
|
|||| || | ||||||| |||||||||| || || || | ||| |||||||| ||||||| || ||| |||||||| || ||||||||||||||| ||| |
|
|
| T |
5731600 |
gtaccagcatttggatcaaactcccatgtctgcctccctaaaaagttatttgtactgaatatgtgtggatcattccccccatctgctatcttcagcctcc |
5731699 |
T |
|
| Q |
320 |
acatctt |
326 |
Q |
| |
|
||||||| |
|
|
| T |
5731700 |
acatctt |
5731706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 119 - 325
Target Start/End: Original strand, 12143011 - 12143217
Alignment:
| Q |
119 |
gtacctgaaaacgccaaaggaggtcaccacaggtcttaacattgaagcggttattatagaaattcttacgagcttcttcaacttgtgctctctcttcttc |
218 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| | |||||| || || ||||| |||||||||| | ||||||||||||||| ||||| ||||| | |
|
|
| T |
12143011 |
gtacctgaaagcgccaaaggaggtcgccacatggcttaaccttaaatcggttgatatagaaattgtgacgagcttcttcaaccattgctcgttcttcatg |
12143110 |
T |
|
| Q |
219 |
actacctgcttctggatcatactcccatgtttgtcttcccacaaaattatttgtgctgaataagtatggctcattcccaccttctgctatcttcagcttc |
318 |
Q |
| |
|
| ||||||| || || ||| | |||||||| |||||||| ||||| ||||||||| |||||| ||| || || |||||||| ||||||||||| ||| || |
|
|
| T |
12143111 |
agtacctgcatcagggtcaaattcccatgtctgtcttcctacaaagttatttgtggtgaatatgtaagggtccttcccaccatctgctatcttaagcctc |
12143210 |
T |
|
| Q |
319 |
cacatct |
325 |
Q |
| |
|
||||||| |
|
|
| T |
12143211 |
cacatct |
12143217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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