View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7902_low_3 (Length: 495)

Name: NF7902_low_3
Description: NF7902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7902_low_3
NF7902_low_3
[»] chr2 (3 HSPs)
chr2 (92-468)||(28209836-28210203)
chr2 (258-343)||(28543766-28543851)
chr2 (257-338)||(45701187-45701268)
[»] chr7 (3 HSPs)
chr7 (257-330)||(42453643-42453716)
chr7 (261-335)||(14241297-14241371)
chr7 (258-336)||(41242163-41242241)
[»] chr5 (2 HSPs)
chr5 (258-338)||(37268330-37268410)
chr5 (291-335)||(7123964-7124008)
[»] chr3 (1 HSPs)
chr3 (257-336)||(7638884-7638963)
[»] chr4 (6 HSPs)
chr4 (258-336)||(46191195-46191273)
chr4 (257-330)||(135820-135892)
chr4 (396-450)||(21141807-21141858)
chr4 (299-338)||(1463332-1463371)
chr4 (257-335)||(13159698-13159776)
chr4 (257-338)||(44546625-44546706)
[»] chr1 (1 HSPs)
chr1 (258-335)||(10349537-10349614)
[»] chr6 (1 HSPs)
chr6 (291-335)||(31848086-31848130)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 92 - 468
Target Start/End: Original strand, 28209836 - 28210203
Alignment:
Q  92 cccaaacaaatggaccttattatcctcacattattagtttttaaataacaaagacgaatgatcttctctccaaatnnnnnnnnnnnnncacatatttgct 191  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||             | ||||||||||    
T  28209836 cccaaacaaacggaccttattatcctcacattattagtttt-aaataacaaagatgaatgatcttctgtccaaataaaaagaa-----cgcatatttgct 28209929  T
Q  192 agcttagacttannnnnnncttcctacatcgtcgcttgtgcttagtctaacnnnnnnnnnnnnnngaacaaattaaaatggaaaatattgcaacaaccaa 291  Q
    ||||||||||||       ||||||||||||||||| ||| ||||||||||               ||||||| ||||||||| ||||||||||||||||    
T  28209930 agcttagacttattttttacttcctacatcgtcgctcgtgtttagtctaactttttttttttt---aacaaatcaaaatggaatatattgcaacaaccaa 28210026  T
Q  292 aagtgaatcaccccgtataaggtgtgctaaaagtgatgactcactcacaatcagacatggcccctatgaaaaggtcgtcaaccaccaaggnnnnnnnnnn 391  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||              
T  28210027 aagtgaatcaccccgcacaaggtgtgctaaaagtgatgactcactcacaatcagacatgacccctatgaaaaggtcgccaaccaccaaggaaaaaaacga 28210126  T
Q  392 nnnnttacatgacacccatacaaaggagagggtgtcgccgccaccagtcatgataacaataccctaaaggaacacga 468  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28210127 aaaattacatgacacccatacaaaggagagggtgtcgccgccaccagtcatgataacaataccctaaaggaacacga 28210203  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 28543851 - 28543766
Alignment:
Q  258 aacaaattaaaatggaaaatattgcaacaaccaaaagtgaatcaccccgtataaggtgtgctaaaagtgatgactcactcacaatc 343  Q
    ||||||||||||||||| |||||||   |||| ||||||| |||| || || |||| |||||||||||| ||| ||||||| ||||    
T  28543851 aacaaattaaaatggaatatattgctcaaaccgaaagtgattcactccatacaaggcgtgctaaaagtggtgaatcactcaaaatc 28543766  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 338
Target Start/End: Original strand, 45701187 - 45701268
Alignment:
Q  257 gaacaaattaaaatggaaaatattgcaacaaccaaaagtgaatcaccccgtataaggtgtgctaaaagtgatgactcactca 338  Q
    |||||||| ||||||||| |||||||   ||  |||||||| |||||| | | ||||||||||||||| ||||| |||||||    
T  45701187 gaacaaatcaaaatggaatatattgcttaaaagaaaagtgattcacccagcacaaggtgtgctaaaagcgatgaatcactca 45701268  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 42453716 - 42453643
Alignment:
Q  257 gaacaaattaaaatggaaaatattgcaacaaccaaaagtgaatcaccccgtataaggtgtgctaaaagtgatga 330  Q
    |||||||| ||||||||| |||||||   ||| || ||||| |||||||| |||||||||||||||||||||||    
T  42453716 gaacaaataaaaatggaatatattgctcaaacgaacagtgattcaccccgcataaggtgtgctaaaagtgatga 42453643  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 14241371 - 14241297
Alignment:
Q  261 aaattaaaatggaaaatattgcaacaaccaaaagtgaatcaccccgtataaggtgtgctaaaagtgatgactcac 335  Q
    |||| |||||| || ||||||| | ||| |||||||| |||||||| | ||| ||||||||||||||||| ||||    
T  14241371 aaatcaaaatgaaatatattgctaaaacgaaaagtgattcaccccgcacaagatgtgctaaaagtgatgaatcac 14241297  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 336
Target Start/End: Original strand, 41242163 - 41242241
Alignment:
Q  258 aacaaattaaaatggaaaatattgcaacaaccaaaagtgaatcaccccgtataaggtgtgctaaaagtgatgactcact 336  Q
    ||||||| ||||||||| ||||| |   ||| |||||||| |||||||| | |||||||||||||| |||||| |||||    
T  41242163 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccgcacaaggtgtgctaaaattgatgaatcact 41242241  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 338
Target Start/End: Complemental strand, 37268410 - 37268330
Alignment:
Q  258 aacaaattaaaatggaaaatattgcaacaaccaaaagtgaatcaccccgtataaggtgtgctaaaagtgatgactcactca 338  Q
    ||||||| ||||||||| |||||||   ||  |||||||| |||||||||| |||||||||||||||||| || |||||||    
T  37268410 aacaaatcaaaatggaatatattgctcaaaggaaaagtgattcaccccgtacaaggtgtgctaaaagtgacgaatcactca 37268330  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 7123964 - 7124008
Alignment:
Q  291 aaagtgaatcaccccgtataaggtgtgctaaaagtgatgactcac 335  Q
    ||||||| ||| |||| ||||||||||||||||||||||| ||||    
T  7123964 aaagtgattcaacccgcataaggtgtgctaaaagtgatgaatcac 7124008  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 7638884 - 7638963
Alignment:
Q  257 gaacaaattaaaatggaaaatattgcaacaaccaaaagtgaatcaccccgtataaggtgtgctaaaagtgatgactcact 336  Q
    |||||||| ||||||||| ||||| |   ||| |||||||| |||||||| ||||||||| ||||||||||||| |||||    
T  7638884 gaacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccgcataaggtgtactaaaagtgatgaatcact 7638963  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 336
Target Start/End: Original strand, 46191195 - 46191273
Alignment:
Q  258 aacaaattaaaatggaaaatattgcaacaaccaaaagtgaatcaccccgtataaggtgtgctaaaagtgatgactcact 336  Q
    ||||||| ||||||||| |||||||   ||| |||||||| |||||||| | || ||||||||||| ||||||||||||    
T  46191195 aacaaatcaaaatggaatatattgctcaaacgaaaagtgattcaccccgcacaatgtgtgctaaaaatgatgactcact 46191273  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 135820 - 135892
Alignment:
Q  257 gaacaaattaaaatggaaaatattgcaacaaccaaaagtgaatcaccccgtataaggtgtgctaaaagtgatga 330  Q
    |||||||| ||||||||| |||||||  ||| | ||||||| |||||||||| |||||||||||| ||||||||    
T  135820 gaacaaatcaaaatggaatatattgct-caaacgaaagtgattcaccccgtacaaggtgtgctaagagtgatga 135892  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 450
Target Start/End: Complemental strand, 21141858 - 21141807
Alignment:
Q  396 ttacatgacacccatacaaaggagagggtgtcgccgccaccagtcatgataacaa 450  Q
    |||||| ||||||||||||||||||||||||   |||||||| ||||||||||||    
T  21141858 ttacataacacccatacaaaggagagggtgt---cgccaccaatcatgataacaa 21141807  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 1463371 - 1463332
Alignment:
Q  299 tcaccccgtataaggtgtgctaaaagtgatgactcactca 338  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  1463371 tcaccccgcataaggtgtgctaaaagtgatgaatcactca 1463332  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 335
Target Start/End: Original strand, 13159698 - 13159776
Alignment:
Q  257 gaacaaattaaaatggaaaatattgcaacaaccaaaagtgaatcaccccgtataaggtgtgctaaaagtgatgactcac 335  Q
    |||||||| ||||||||| |||||||   ||| |||||||| |||||||| | || |||||||||||||| ||| ||||    
T  13159698 gaacaaatcaaaatggaatatattgctcaaacgaaaagtgattcaccccgcacaaagtgtgctaaaagtggtgaatcac 13159776  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 338
Target Start/End: Complemental strand, 44546706 - 44546625
Alignment:
Q  257 gaacaaattaaaatggaaaatattgcaacaaccaaaagtgaatcaccccgtataaggtgtgctaaaagtgatgactcactca 338  Q
    |||||||| ||||||||| |||||||   ||  |||||||| |||||||| | ||||||||||||||| || || |||||||    
T  44546706 gaacaaatcaaaatggaatatattgctcaaaggaaaagtgattcaccccgcacaaggtgtgctaaaagcgacgaatcactca 44546625  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 10349614 - 10349537
Alignment:
Q  258 aacaaattaaaatggaaaatattgcaacaaccaaaagtgaatcaccccgtataaggtgtgctaaaagtgatgactcac 335  Q
    ||||||| ||||||||| |||||||   |||  ||||||| |||||| | | ||||||||||||||||||||| ||||    
T  10349614 aacaaatcaaaatggaatatattgctcaaactgaaagtgattcaccctgcacaaggtgtgctaaaagtgatgaatcac 10349537  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 31848086 - 31848130
Alignment:
Q  291 aaagtgaatcaccccgtataaggtgtgctaaaagtgatgactcac 335  Q
    ||||||| |||||||| | ||||||||||||||||||||| ||||    
T  31848086 aaagtgattcaccccgcacaaggtgtgctaaaagtgatgaatcac 31848130  T

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