View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7902_low_4 (Length: 483)

Name: NF7902_low_4
Description: NF7902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7902_low_4
NF7902_low_4
[»] chr4 (19 HSPs)
chr4 (72-466)||(4008553-4008944)
chr4 (50-217)||(3985786-3985953)
chr4 (53-217)||(3816395-3816559)
chr4 (50-195)||(4024008-4024153)
chr4 (62-196)||(4001113-4001247)
chr4 (53-202)||(3956636-3956785)
chr4 (72-217)||(4217417-4217562)
chr4 (50-213)||(3808823-3808986)
chr4 (51-184)||(3934121-3934254)
chr4 (50-184)||(3920899-3921033)
chr4 (50-121)||(3800482-3800553)
chr4 (271-431)||(4023767-4023927)
chr4 (270-372)||(3956833-3956935)
chr4 (270-372)||(3985627-3985729)
chr4 (331-377)||(4000905-4000951)
chr4 (318-367)||(3934570-3934619)
chr4 (13-51)||(4009025-4009063)
chr4 (62-135)||(3964684-3964757)
chr4 (13-42)||(4024257-4024286)
[»] chr5 (2 HSPs)
chr5 (50-237)||(13396740-13396927)
chr5 (270-371)||(13396601-13396702)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 72 - 466
Target Start/End: Complemental strand, 4008944 - 4008553
Alignment:
Q  72 taccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaaaagctttggtgtggagtgaagg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  4008944 taccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaagtagaaaagctttggtatggagtgaagg 4008845  T
Q  172 taattgaatatgtatcttccagattaaatttgtctaaattcaaggagtttgcaattaattacttaagcgtttgtttgatgttgccnnnnnnnnnnnnggc 271  Q
    ||||||| |||||||||||| ||||||||||  ||  ||||||||| |||| || ||||||||||||| | |||||||| |  ||            |||    
T  4008844 taattgactatgtatcttcctgattaaatttcgcttgattcaaggaatttgtaactaattacttaagcttatgtttgatatcaccataattttt---ggc 4008748  T
Q  272 aggatctagttaatttaaaagaatttagactctttgattcacgatccctgatggagttgccagacctttcaaaagctacaaatctgaaagtattgaatat 371  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4008747 aggatctagttaatttacaagaatttagactctttgattcacgatccttgaaggagttgccagacctttcaaaagctacaaatcttaaagtattgaatat 4008648  T
Q  372 cacagaagctcctttcttgaaaaacgtcgatccatctattttatctcttgacaatcttgtcaaattggatttaacttgttgtgataataatttaa 466  Q
    |||| ||||||| || ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||    
T  4008647 cacacaagctccattgttgaaaaacgtcgatccatctgttttatctcttgacaatcttgtcgaattggatctaacttgctgtgataataatttaa 4008553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 50 - 217
Target Start/End: Complemental strand, 3985953 - 3985786
Alignment:
Q  50 aagatatcttcattggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaa 149  Q
    |||||||||||||||| | || ||||||||| | ||||||||||||||||||||||| ||||| ||||||||||| |||||||| | ||||| | |||||    
T  3985953 aagatatcttcattgggtacattaccctctagagtcattgccaaagaagttttctgcagagaaacttgttatattggacttgtcgtatagcctagtagaa 3985854  T
Q  150 aagctttggtgtggagtgaaggtaattgaatatgtatcttccagattaaatttgtctaaattcaagga 217  Q
    |||||||||||||||||  |||||||||||||||| |||  |||||||||||| || |||||||||||    
T  3985853 aagctttggtgtggagtacaggtaattgaatatgtgtctatcagattaaatttatcaaaattcaagga 3985786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 53 - 217
Target Start/End: Complemental strand, 3816559 - 3816395
Alignment:
Q  53 atatcttcattggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaaaag 152  Q
    ||||||||||||||   ||| ||||||||||||||| ||| |||||||||||||  |||||||||||||||| |||||||||  ||| | | | ||||||    
T  3816559 atatcttcattggacatactgccctctaaaatcattcccagagaagttttctgcaaagaatcttgttatattggacttgtcagatagtctagtggaaaag 3816460  T
Q  153 ctttggtgtggagtgaaggtaattgaatatgtatcttccagattaaatttgtctaaattcaagga 217  Q
    ||||||||||||||| ||||||||| |||| ||||||||| ||||||||| ||| ||||||||||    
T  3816459 ctttggtgtggagtgcaggtaattggatatttatcttccaaattaaatttatcttaattcaagga 3816395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 4024153 - 4024008
Alignment:
Q  50 aagatatcttcattggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaa 149  Q
    ||||||||||  ||||||| | ||||||||||||||||| ||| |||||||||||||  |||||||||||||||| |||||||||  ||| | | | |||    
T  4024153 aagatatctttcttggatgaattaccctctaaaatcattcccagagaagttttctgcaaagaatcttgttatattggacttgtcagatagtctagtggaa 4024054  T
Q  150 aagctttggtgtggagtgaaggtaattgaatatgtatcttccagat 195  Q
    |||||||||||||||||| |||||| ||||||| | ||||| ||||    
T  4024053 aagctttggtgtggagtgcaggtaagtgaatatttctcttcaagat 4024008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 62 - 196
Target Start/End: Complemental strand, 4001247 - 4001113
Alignment:
Q  62 ttggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaaaagctttggtgt 161  Q
    |||||| || ||||||||||||||||| ||||||||||||||||   |||||||||||||||| ||||| |||  ||| | | | ||||| |||||||||    
T  4001247 ttggatacattaccctctaaaatcattcccaaagaagttttctggaaagaatcttgttatattggacttttcacatagtcgagtggaaaatctttggtgt 4001148  T
Q  162 ggagtgaaggtaattgaatatgtatcttccagatt 196  Q
    |||||| |||||||||||||||| || ||||||||    
T  4001147 ggagtgcaggtaattgaatatgtgtcatccagatt 4001113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 53 - 202
Target Start/End: Original strand, 3956636 - 3956785
Alignment:
Q  53 atatcttcattggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaaaag 152  Q
    |||||||||||||||    ||||||||||||||| |  || ||||||||||||| ||||||||||||||||| ||| |||||  ||||| | | |||||     
T  3956636 atatcttcattggatatgttaccctctaaaatcactctcagagaagttttctgcagagaatcttgttatattggacctgtcaggtagcctactggaaaaa 3956735  T
Q  153 ctttggtgtggagtgaaggtaattgaatatgtatcttccagattaaattt 202  Q
    ||||||||||||||| || |||||||||| || ||||| |||||||||||    
T  3956736 ctttggtgtggagtgcagataattgaatacgtgtcttctagattaaattt 3956785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 72 - 217
Target Start/End: Complemental strand, 4217562 - 4217417
Alignment:
Q  72 taccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaaaagctttggtgtggagtgaagg 171  Q
    ||||||||||||||||| ||| |||| |||||||| |||||||||||||||||  |||||   | |||  || | ||||||||||||||||||||  |||    
T  4217562 taccctctaaaatcattcccagagaacttttctgcagagaatcttgttatattgaacttgcgttatagtaaagtggaaaagctttggtgtggagtacagg 4217463  T
Q  172 taattgaatatgtatcttccagattaaatttgtctaaattcaagga 217  Q
    ||||||||||||| |||| ||||| |||||| ||| ||||||||||    
T  4217462 taattgaatatgtgtctttcagatgaaatttatcttaattcaagga 4217417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 213
Target Start/End: Complemental strand, 3808986 - 3808823
Alignment:
Q  50 aagatatcttcattggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaa 149  Q
    ||||||||||||||||||| | |  |||||||||||||| ||| |||| |||||||| |||||||||||||||||  ||||||    |||  || | |||    
T  3808986 aagatatcttcattggatgtattgtcctctaaaatcattcccagagaacttttctgcagagaatcttgttatattgaacttgtatgatagtaaaatggaa 3808887  T
Q  150 aagctttggtgtggagtgaaggtaattgaatatgtatcttccagattaaatttgtctaaattca 213  Q
    ||||||||| |||||||| ||||||||| ||| || ||||||| ||||||||| ||| ||||||    
T  3808886 aagctttggcgtggagtgcaggtaattggatacgtgtcttccaaattaaatttatcttaattca 3808823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 3934121 - 3934254
Alignment:
Q  51 agatatcttcattggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaaa 150  Q
    ||||||||||||||| |    ||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||||||   |||| | | | ||||    
T  3934121 agatatcttcattgggtatgttaccctctaaaatcattcccagagaagttttctgcagagaatcttgttatattggacttgtatcttagtcgaatggaaa 3934220  T
Q  151 agctttggtgtggagtgaaggtaattgaatatgt 184  Q
    |||| |||||||||||  ||||||||||||||||    
T  3934221 agctatggtgtggagtacaggtaattgaatatgt 3934254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 184
Target Start/End: Original strand, 3920899 - 3921033
Alignment:
Q  50 aagatatcttcattggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaa 149  Q
    ||||||||||||||||||  | |||||||||||||||||  || ||||||||| ||| ||||||||||||||||| |||||||   || | | | | |||    
T  3920899 aagatatcttcattggatagattaccctctaaaatcattctcagagaagttttttgctgagaatcttgttatattggacttgtatcttggtcgaatggaa 3920998  T
Q  150 aagctttggtgtggagtgaaggtaattgaatatgt 184  Q
    ||||| |||||||||||  ||||||||||||||||    
T  3920999 aagctatggtgtggagtacaggtaattgaatatgt 3921033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 3800553 - 3800482
Alignment:
Q  50 aagatatcttcattggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttat 121  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||  |||||||||||||    
T  3800553 aagatatcttcattggatgcattaccctctaaaatcattcccagagaagttttctgcaaagaatcttgttat 3800482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 431
Target Start/End: Complemental strand, 4023927 - 4023767
Alignment:
Q  271 caggatctagttaatttaaaagaatttagactctttgattcacgatccctgatggagttgccagacctttcaaaagctacaaatctgaaagtattgaata 370  Q
    |||||||||||||||||||||||  |||||||||   ||||   || ||||| |||||| || ||| ||||||||||||| ||||| |||||||||||||    
T  4023927 caggatctagttaatttaaaagaggttagactctcctattcgaaattcctgaaggagttacctgacttttcaaaagctactaatcttaaagtattgaata 4023828  T
Q  371 tcacagaagctcctttcttgaaaaacgtcgatccatctattttatctcttgacaatcttgt 431  Q
    |  || |   || |   ||||||| |||| ||||||||||||| ||||||||||| |||||    
T  4023827 tggcacattgtcataatttgaaaagcgtccatccatctattttctctcttgacaagcttgt 4023767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 372
Target Start/End: Original strand, 3956833 - 3956935
Alignment:
Q  270 gcaggatctagttaatttaaaagaatttagactctttgattcacgatccctgatggagttgccagacctttcaaaagctacaaatctgaaagtattgaat 369  Q
    ||||||||| ||||||||||||||| ||| |||||   ||||| ||| ||||| || | | |||||| |||||||||| |||||||| || |||||||||    
T  3956833 gcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattgaat 3956932  T
Q  370 atc 372  Q
    |||    
T  3956933 atc 3956935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 372
Target Start/End: Complemental strand, 3985729 - 3985627
Alignment:
Q  270 gcaggatctagttaatttaaaagaatttagactctttgattcacgatccctgatggagttgccagacctttcaaaagctacaaatctgaaagtattgaat 369  Q
    |||||||||| |||||||||||||| ||| ||||| |  ||||  |  ||||| |||||| |||||| |||||||||| | |||||| || |||||||||    
T  3985729 gcaggatctaattaatttaaaagaagttacactctctttttcagaagacctgaaggagttaccagacttttcaaaagccataaatcttaaggtattgaat 3985630  T
Q  370 atc 372  Q
    |||    
T  3985629 atc 3985627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 4000951 - 4000905
Alignment:
Q  331 ccagacctttcaaaagctacaaatctgaaagtattgaatatcacaga 377  Q
    |||||| ||||||||||||||||||| || |||||||||||||||||    
T  4000951 ccagacttttcaaaagctacaaatcttaaggtattgaatatcacaga 4000905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 3934570 - 3934619
Alignment:
Q  318 cctgatggagttgccagacctttcaaaagctacaaatctgaaagtattga 367  Q
    ||||| ||||||||||||| |||||||||| |||||||| ||||||||||    
T  3934570 cctgaaggagttgccagacttttcaaaagccacaaatcttaaagtattga 3934619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 4009063 - 4009025
Alignment:
Q  13 agatgaccaacctgcaatttttggattttcatgatggaa 51  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  4009063 agatgaccaacctgctatttttggattttcatggtggaa 4009025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 3964684 - 3964757
Alignment:
Q  62 ttggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcat 135  Q
    ||||||||| |||||| | |||||||||||| |  | ||||| |||||||| || |||||||| ||||||||||    
T  3964684 ttggatgcattaccctttgaaatcattgccagatgaattttcagcggagaaactcgttatattggacttgtcat 3964757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 4024286 - 4024257
Alignment:
Q  13 agatgaccaacctgcaatttttggattttc 42  Q
    ||||||||||||||||||||||||||||||    
T  4024286 agatgaccaacctgcaatttttggattttc 4024257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 13396927 - 13396740
Alignment:
Q  50 aagatatcttcattggatgcactaccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaattagaa 149  Q
    |||||||||| |||||||||| ||||||||||||||||| ||| ||||||||||||  || |||||||||||| | | |||| ||| |||||   |||||    
T  13396927 aagatatctttattggatgcattaccctctaaaatcattcccagagaagttttctgttgataatcttgttatactgggcttgccatatagccttgtagaa 13396828  T
Q  150 aagctttggtgtggagtgaaggtaattgaatatgtatcttccagattaaatttgtctaaattcaaggagtttgcaattaattacttaa 237  Q
    |||||||||||||||||  ||||||||||||| || |||| |||||||||||| ||| |||||||||| ||   ||||||||||||||    
T  13396827 aagctttggtgtggagtacaggtaattgaatacgtgtctttcagattaaatttatcttaattcaaggaattataaattaattacttaa 13396740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 371
Target Start/End: Complemental strand, 13396702 - 13396601
Alignment:
Q  270 gcaggatctagttaatttaaaagaatttagactctttgattcacgatccctgatggagttgccagacctttcaaaagctacaaatctgaaagtattgaat 369  Q
    |||||||||||||||||||||| || ||| |||||   |||||  || ||||| |||||| |||||| ||||||| || |||||||| || |||||||||    
T  13396702 gcaggatctagttaatttaaaacaagttacactctgccattcaaaatacctgaaggagttaccagacttttcaaacgccacaaatcttaaggtattgaat 13396603  T
Q  370 at 371  Q
    ||    
T  13396602 at 13396601  T

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