View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7902_low_5 (Length: 355)
Name: NF7902_low_5
Description: NF7902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7902_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 30075280 - 30075605
Alignment:
| Q |
18 |
gtttaatcaatgcattgatatgagataaatgacctttaaacttattccataatcaaaattgagaatttttataaacaaaaactccccctcatgattagaa |
117 |
Q |
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| T |
30075280 |
gtttaatcaatgcattgatatgagataaatgacctttaaacttattccataatcataattgagaattttaataaacaaaaactccccctcatgattagaa |
30075379 |
T |
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| Q |
118 |
ataaaattatgcaaaaattaaaattgaaccataattgtactttattatttatagtccaaatattacaaaatagcattcatgatgcagatacatggttaaa |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30075380 |
ataaaattatgcaataattaaaattgaaccataattgtactttattatttatagtccaaatattacaaaatagcattcatgatgcagatacatggttaaa |
30075479 |
T |
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| Q |
218 |
taaatagttgatcttaacaacgatgatagcaaacatcattttttactagccaaaataagatcataataggactataatgccaagnnnnnnnnnattcata |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30075480 |
aaaatagttgatcttaacaacgatgatagcaaacatcattttttactagccaaaataagatcataataggactataatgccaagttttttttcattcata |
30075579 |
T |
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| Q |
318 |
accaaaaaattgatccttttcttctc |
343 |
Q |
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|||||||||||||||||||||||||| |
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| T |
30075580 |
accaaaaaattgatccttttcttctc |
30075605 |
T |
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