View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7903_low_1 (Length: 483)
Name: NF7903_low_1
Description: NF7903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7903_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 11 - 464
Target Start/End: Complemental strand, 3420494 - 3420041
Alignment:
| Q |
11 |
attattctcactactcgtaccccgaaatcgatgatttcgtcactgtcaacactaaaacagacttgccagagcaaaacagtcccggcaccaccgcagatgg |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3420494 |
attactctcactactcgtaccccgaaatcgatgatttcgtcactgtcaacactaaaacagacttgccagagcaaaacagtcccggcaccaccgcagatgg |
3420395 |
T |
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| Q |
111 |
cgtcgttccggtgcagtctcatagcaaaaccgccaccgaacacgaacatgaacactactcagatatcaacatcgatttctccaactcaaaacctttcact |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3420394 |
cgtcgttccggtgcagtctcatagcaaaaccgccaccgaacacgaacatgaacactactcagatatcaacatcgatttctccaactcaaaacctttcact |
3420295 |
T |
|
| Q |
211 |
tacaatttcaatcacaccgtaagaaagagaaatcataaattcaaaaaactacgatgaatcgttatatttacctcttcaatttgaaagctgaatgttctta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3420294 |
tacaatttcaatcacaccgtaagaaagagaaatcataaattcaaaaaattacgatgaatcgttatatttacctcttcaatttgaaagctgaatgttctta |
3420195 |
T |
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| Q |
311 |
tttcttttttgtgttgtttaggtatcttcgccgtcgatggatgttggagttgtaccggaaggaaacgtgatgacggagatatcgtactgcagttaccaaa |
410 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3420194 |
tttcttttttgtgttgtttaggtatcttcaccgtcgatggatgttggagttgtgccggacggaaacgtgatgacggagatatcgtactgcagttaccaaa |
3420095 |
T |
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| Q |
411 |
caacggcgacggagacggcgccgatgacggtggcggttccgatgacggcggtgg |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3420094 |
caacggcgacggagacggcgccgatgacggtggcggttccgatgacggcggtgg |
3420041 |
T |
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