View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7903_low_4 (Length: 280)
Name: NF7903_low_4
Description: NF7903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7903_low_4 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 55 - 280
Target Start/End: Complemental strand, 16544464 - 16544244
Alignment:
| Q |
55 |
tgagggagcatgaggtaacggtggatgcacgcgcgtgggatcgagagtgagtataaaaggaatattctggtttaagatttcatttcttcccctttaccct |
154 |
Q |
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|||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| ||| |
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| T |
16544464 |
tgagggagcatgagataacggaggatgcacacgcgtgggatcgagagtgagtataaaaggaatattctgatttaagatttcatttcttctcttttatcct |
16544365 |
T |
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| Q |
155 |
ctctctaaaccgatctccctcacctctctctacaatttcaaagaagnnnnnnnnnnnnnnnnnntgaagaacatgaagaacaatcttcatcttctccgac |
254 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16544364 |
ctctctaaaccaatctctctcacctctctctacaatttcaaagaag-----aaaaaaatacaaatgaagaacatgaagaacaatcttcatcttctccgac |
16544270 |
T |
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| Q |
255 |
gggattgtgtcttccggcgcggtggc |
280 |
Q |
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| T |
16544269 |
gggattgtatcttccagcgcggtggc |
16544244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 55 - 280
Target Start/End: Original strand, 16621198 - 16621418
Alignment:
| Q |
55 |
tgagggagcatgaggtaacggtggatgcacgcgcgtgggatcgagagtgagtataaaaggaatattctggtttaagatttcatttcttcccctttaccct |
154 |
Q |
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|||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| ||| |
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| T |
16621198 |
tgagggagcatgagataacggaggatgcacacgcgtgggatcgagagtgagtataaaaggaatattctgatttaagatttcatttcttctcttttatcct |
16621297 |
T |
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| Q |
155 |
ctctctaaaccgatctccctcacctctctctacaatttcaaagaagnnnnnnnnnnnnnnnnnntgaagaacatgaagaacaatcttcatcttctccgac |
254 |
Q |
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| T |
16621298 |
ctctctaaaccaatctctctcacctctctctacaatttcaaagaag-----aaaaaaatacaaatgaagaacatgaagaacaatcttcatcttctccgac |
16621392 |
T |
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| Q |
255 |
gggattgtgtcttccggcgcggtggc |
280 |
Q |
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| T |
16621393 |
gggattgtatcttccagcgcggtggc |
16621418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 55 - 279
Target Start/End: Complemental strand, 20501135 - 20500930
Alignment:
| Q |
55 |
tgagggagcatgaggtaacggtggatgcacgcgcgtgggatcgagagtgagtataaaaggaatattctggtttaagatttcatttcttcccctttaccct |
154 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| || | |||| ||| |
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| T |
20501135 |
tgagggagcatgagataacggtggatgcacgcgcgtgggatcgagagtgagtataaaaggaatattctgattaaagatttcatttcgtctcttttatcct |
20501036 |
T |
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| Q |
155 |
ctctctaaaccgatctccctcacctctctctacaatttcaaagaagnnnnnnnnnnnnnnnnnntgaagaacatgaagaacaatcttcatcttctccgac |
254 |
Q |
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| T |
20501035 |
ctctctaaaccaatctctctcacctctctctacaatttcaaagaaga-------------------aaaaaaatgaagaacaatcttcatcttctccgac |
20500955 |
T |
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| Q |
255 |
gggattgtgtcttccggcgcggtgg |
279 |
Q |
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| T |
20500954 |
gggattgtatcttccggcgcggtgg |
20500930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 59 - 186
Target Start/End: Original strand, 31356077 - 31356204
Alignment:
| Q |
59 |
ggagcatgaggtaacggtggatgcacgcgcgtgggatcgagagtgagtataaaaggaatattctggtttaagatttcatttcttcccctttaccctctct |
158 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| | |||| ||||||| |
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| T |
31356077 |
ggagcatgagataacggtggatgcacgcgcgtgggatcgagagtgagtataaaaggaatattctggtttgtgatctcatttcttctcttttatcctctct |
31356176 |
T |
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| Q |
159 |
ctaaaccgatctccctcacctctctcta |
186 |
Q |
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| T |
31356177 |
ctaaaccaaactctctcacttctctcta |
31356204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 280
Target Start/End: Original strand, 29185143 - 29185282
Alignment:
| Q |
141 |
ttcccctttaccctctctctaaaccgatctccctcacctctctctacaatttcaaagaagnnnnnnnnnnnnnnnnnntgaagaacatgaagaacaatct |
240 |
Q |
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||||| |||| |||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29185143 |
ttcccttttatcctctctctaaaccgatctctcttacctctctctacaatttcaaagaagaacaaataaaaataaaaatgaagaacatgaagaacaatct |
29185242 |
T |
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| Q |
241 |
tcatcttctccgacgggattgtgtcttccggcgcggtggc |
280 |
Q |
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| T |
29185243 |
tcatcttctccgacgggattgtgtcttccggcgcggtggc |
29185282 |
T |
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