View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7903_low_6 (Length: 250)
Name: NF7903_low_6
Description: NF7903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7903_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 8117905 - 8118036
Alignment:
| Q |
36 |
aacttttatgtttacaatttatatacggaaaaatgaagttgaggttgctgaaattgaacattaattcaatgagattatctatgaatgattcctagattgc |
135 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8117905 |
aacttttatgtttataatttatatacggaaaaatgaagttgaggttgctgaaattgaacattaattcaatgagattatctatgaatgattcctagattgc |
8118004 |
T |
|
| Q |
136 |
ttttgaagaattatgatttgtttatctaaaca |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8118005 |
ttttgaagaattatgatttgtttatctaaaca |
8118036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 8118170 - 8118253
Alignment:
| Q |
167 |
aaaaaacttcttatcatgggtatttttcataggaaattgtcatttcatgattagttacttgcataatttaactaaattttattt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8118170 |
aaaaaacttcttatcatgggtatttttcataggaaattgtcatttcatgattagttacttgcataatttaactaaattttattt |
8118253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University