View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7904_high_2 (Length: 607)
Name: NF7904_high_2
Description: NF7904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7904_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 196 - 589
Target Start/End: Original strand, 31719333 - 31719733
Alignment:
| Q |
196 |
ttccacattttacattatttagcaataaatagaaattatnnnnnnnttaacataaagttccaatgtcacattttgactaaaaataacctaagctaaacat |
295 |
Q |
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| T |
31719333 |
ttccacattttacattatttagcaataaatagaaattataaaaaa-ttaacataaagttccaatgtcacattttgactaaaaataacctaagctaaacat |
31719431 |
T |
|
| Q |
296 |
cattaaattaacttatgaagctacaaagaaggagtgtaagtaacctcctggtgagcagatctacggattctgtctgtctgccgggcaagacggatcttct |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31719432 |
cattaaattaacttatgaagctacaaagaaggagtgtaagtaacctcctggtgagcagatctacggattctgtctgactgccgggcaagacggatcttct |
31719531 |
T |
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| Q |
396 |
tcagcacatacctaaacacattaaatt------------aaaactatatgttaattagctacctagcttatactaatcataatgaaaaacaaacacatta |
483 |
Q |
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| T |
31719532 |
tcagcacatacctaaacacattaaattaaaaaaaaaaaaaaaactatatgttaattagctac----cttatactaatcataatgaaaaacaaacacatta |
31719627 |
T |
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| Q |
484 |
cttaaactcttaaataaacttcaaagaacacattatagtaacaaagagttagaacatcaccttttgttttcatgcttgtgtcttacaagcaaagcagaag |
583 |
Q |
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| T |
31719628 |
cttaaactcttaaataaacttgaaagaacacattatagtaacaaagagttagaacatcaccttttgttttcatgcttgtgtcttacaagcaaagcagaag |
31719727 |
T |
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| Q |
584 |
caaaag |
589 |
Q |
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|||||| |
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| T |
31719728 |
caaaag |
31719733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 31719112 - 31719318
Alignment:
| Q |
1 |
aaacaacaaagagttaaagcaaataaaatgattttgttttataaaaggctaaccttttctacccaggaatctttatactctacaatgaatggattacgaa |
100 |
Q |
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| T |
31719112 |
aaacaacaaagagttaaagcaaataaaatgattttgttttataaaaggctaaccttttctacccaggaatctttatactctacaatgaacggattacgaa |
31719211 |
T |
|
| Q |
101 |
ctttagatataagttccatctgcaaaacaaggagtgtacaacaaagcatcttagaatctaataataaacttagcaagacaaaataagtttccaagttcca |
200 |
Q |
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| T |
31719212 |
ctttagatataagttccatctgcaaaacaaggagtgtacaacaaagcatcttagaatctaataataaacttagcaagacaaaataagtttccaagttcca |
31719311 |
T |
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| Q |
201 |
catttta |
207 |
Q |
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||||||| |
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| T |
31719312 |
catttta |
31719318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 36069823 - 36069892
Alignment:
| Q |
52 |
accttttctacccaggaatctttatactctacaatgaatggattacgaactttagatataagttccatct |
121 |
Q |
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| T |
36069823 |
accttttctacccatgaatctttatactccacaatgaatgggtttcgtaatttagagataagctccatct |
36069892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 38242144 - 38242062
Alignment:
| Q |
45 |
aaggctaaccttttctacccaggaatctttatactctacaatgaatggattacgaactttagatataagttccatctgcaaaa |
127 |
Q |
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| T |
38242144 |
aaggctgaccttttctacccaagaatctttatactccacaataaagggattgcgaactttagatataagctccatctgcaaaa |
38242062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 338 - 410
Target Start/End: Complemental strand, 38241681 - 38241609
Alignment:
| Q |
338 |
acctcctggtgagcagatctacggattctgtctgtctgccgggcaagacggatcttcttcagcacatacctaa |
410 |
Q |
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| T |
38241681 |
acctcctgatgggccgacctacgggttctgtcagtttggcgagcaagacggatcttcttgaggacatacctaa |
38241609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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