View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7904_high_7 (Length: 415)

Name: NF7904_high_7
Description: NF7904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7904_high_7
NF7904_high_7
[»] chr6 (4 HSPs)
chr6 (164-404)||(30399376-30399617)
chr6 (8-148)||(30399610-30399750)
chr6 (8-119)||(24080606-24080717)
chr6 (8-119)||(24070019-24070130)
[»] chr2 (9 HSPs)
chr2 (7-165)||(2591699-2591854)
chr2 (278-404)||(2589185-2589313)
chr2 (8-124)||(2599873-2599987)
chr2 (309-404)||(2596260-2596355)
chr2 (309-404)||(2581571-2581666)
chr2 (8-115)||(2603030-2603137)
chr2 (168-219)||(2589664-2589715)
chr2 (168-219)||(2597207-2597258)
chr2 (361-404)||(2584833-2584876)
[»] chr3 (8 HSPs)
chr3 (8-71)||(21642350-21642413)
chr3 (337-404)||(21642432-21642499)
chr3 (340-404)||(21620765-21620829)
chr3 (8-120)||(28573327-28573439)
chr3 (8-120)||(28584557-28584665)
chr3 (8-120)||(28566582-28566690)
chr3 (8-60)||(26314474-26314526)
chr3 (8-60)||(20615247-20615299)
[»] chr8 (1 HSPs)
chr8 (313-404)||(29157301-29157392)
[»] scaffold0927 (1 HSPs)
scaffold0927 (12-120)||(259-367)
[»] chr7 (2 HSPs)
chr7 (337-404)||(46769624-46769691)
chr7 (355-404)||(20496040-20496089)


Alignment Details
Target: chr6 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 164 - 404
Target Start/End: Complemental strand, 30399617 - 30399376
Alignment:
Q  164 aataaacacaagagaagcttttcaacaaaaataccctagattatatcattagcagtnnnnnnnctatgaccaacgcacagtcaaatagaatcaaaaacat 263  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||        | ||||||| ||||||||||||||||| |||| ||     
T  30399617 aataaacacaagagaagcttttcaacaaaaataacctagattatatcattagcagtaaaaaaattgtgaccaatgcacagtcaaatagaattaaaagcac 30399518  T
Q  264 tgtgaccttttaaactaaaatcaataacttt-aaactcttcctttcctcctttcttcctttcatctaaccagcgcacaaatgtgttgacgtgctttctaa 362  Q
    ||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30399517 tgtcaccttttaaactaaaatcaataacttttaaactcttcctttcctccattcttcctttcatctaaccagcgcacaaatgtcttgacgtgctttctaa 30399418  T
Q  363 atgtcagaaaccaaactttcaacataaaccttggcagagaac 404  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  30399417 atgtcagaaaccaaactttcaacataaaccttggtagagaac 30399376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 30399750 - 30399610
Alignment:
Q  8 ttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgatatatactatgcattcatgcatggataataattcatatcattagaaca 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30399750 ttggtgttcattcatgtaataatcaagatatgatccatcaagaccattttgatatatactctgcattcatgcatggataataattcatatcattagaaca 30399651  T
Q  108 tgacatttaacaaaaagtcgcgtttcaactttcaataaaca 148  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  30399650 tgacatttaacaaaaactcgcgtttcaactttcaataaaca 30399610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 24080717 - 24080606
Alignment:
Q  8 ttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgatatatactatgcattcatgcatggataataattcatatcattagaaca 107  Q
    |||||||||| ||||| | |||||||||||||| ||||||||||| ||||||| |  ||| | ||||||| ||||||||||||||| ||||||||||||     
T  24080717 ttggtgttcactcatgaagcaatcaagatatgacccatcaagaccattttgatctccactctacattcatccatggataataattcttatcattagaact 24080618  T
Q  108 tgacatttaaca 119  Q
    | ||||||||||    
T  24080617 ttacatttaaca 24080606  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 24070019 - 24070130
Alignment:
Q  8 ttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgatatatactatgcattcatgcatggataataattcatatcattagaaca 107  Q
    |||||||||| || || | |||||||||||||| ||||||||||| |||||||    ||| ||||||||| ||||||||||||||| ||||||||||||     
T  24070019 ttggtgttcactcttgaagcaatcaagatatgacccatcaagaccattttgatcaccactctgcattcatccatggataataattcttatcattagaact 24070118  T
Q  108 tgacatttaaca 119  Q
    | ||||||||||    
T  24070119 ttacatttaaca 24070130  T

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Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 2591854 - 2591699
Alignment:
Q  7 tttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgatatatactatgcattcatgcatggataataattcatatcattagaac 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| || |||   ||||||| |||||||||||| ||||||||    
T  2591854 tttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgatctaaactctgtatt---gcatggacaataattcatataattagaac 2591758  T
Q  107 atgacatttaacaaaaagtcgcgtttcaactttcaataaacatgctaatagcccataaa 165  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  2591757 atgacatttaacaaaaagttgcgtttcaactttcaataaacatggtaatagcccataaa 2591699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 278 - 404
Target Start/End: Complemental strand, 2589313 - 2589185
Alignment:
Q  278 ctaaaatcaataac--tttaaactcttcctttcctcctttcttcctttcatctaaccagcgcacaaatgtgttgacgtgctttctaaatgtcagaaacca 375  Q
    ||||||||||||||  |||||||||||||||||| ||||||||  |||| |||||||| | ||||||||| |||||||||||||||||| ||||||||||    
T  2589313 ctaaaatcaataaccttttaaactcttcctttccacctttctttttttcctctaaccatcccacaaatgtcttgacgtgctttctaaatatcagaaacca 2589214  T
Q  376 aactttcaacataaaccttggcagagaac 404  Q
    ||||||||||||||||||||| |||||||    
T  2589213 aactttcaacataaaccttggtagagaac 2589185  T

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Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 2599987 - 2599873
Alignment:
Q  8 ttggtgttcattcatgtaacaatcaa-gatatgatccatcaagaccgttttgatatatactatgcattcatgcatggataataattcatatcattagaac 106  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||| ||||||   |||| || |||||||||||||||||||||    
T  2599987 ttggtgttcattcatgtaacaatcaaagatatgatccatcaagaccgttttgatctaaactctgcatt---gcatcgacaataattcatatcattagaac 2599891  T
Q  107 atgacatttaacaaaaag 124  Q
    ||||||||||||||||||    
T  2599890 atgacatttaacaaaaag 2599873  T

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Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 309 - 404
Target Start/End: Complemental strand, 2596355 - 2596260
Alignment:
Q  309 ctcctttcttcctttcatctaaccagcgcacaaatgtgttgacgtgctttctaaatgtcagaaaccaaactttcaacataaaccttggcagagaac 404  Q
    |||||||||||||||| || ||||| | || |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2596355 ctcctttcttcctttcctccaaccatcccataaatgtcttgacgtgctttctaaatgtcagaaaccaaactttcgacataaaccttggcagagaac 2596260  T

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Target: chr2; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 309 - 404
Target Start/End: Complemental strand, 2581666 - 2581571
Alignment:
Q  309 ctcctttcttcctttcatctaaccagcgcacaaatgtgttgacgtgctttctaaatgtcagaaaccaaactttcaacataaaccttggcagagaac 404  Q
    |||||||||||||||| || ||||| | ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  2581666 ctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctttctaaatgtcagaaaccaagctttcaacataaaccttgacaaagaac 2581571  T

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Target: chr2; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 2603137 - 2603030
Alignment:
Q  8 ttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgatatatactatgcattcatgcatggataataattcatatcattagaaca 107  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||||||||||| || ||| |||||||| |||| |||||||| |||||| |||||||||    
T  2603137 ttggtgttcattcatgtagcaatctagatatgacccatcaagaccgttttgatctacactctgcattcacgcatagataataaatcatataattagaaca 2603038  T
Q  108 tgacattt 115  Q
    || |||||    
T  2603037 tggcattt 2603030  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 2589715 - 2589664
Alignment:
Q  168 aacacaagagaagcttttcaacaaaaataccctagattatatcattagcagt 219  Q
    ||||||| | |||||||||||||||||||||||| |||||||||||||||||    
T  2589715 aacacaacaaaagcttttcaacaaaaataccctatattatatcattagcagt 2589664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 2597258 - 2597207
Alignment:
Q  168 aacacaagagaagcttttcaacaaaaataccctagattatatcattagcagt 219  Q
    ||||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  2597258 aacacaacagaagcttttcaacaaaaatactcttgattatatcattagcagt 2597207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 404
Target Start/End: Complemental strand, 2584876 - 2584833
Alignment:
Q  361 aaatgtcagaaaccaaactttcaacataaaccttggcagagaac 404  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||    
T  2584876 aaatgtcagaaaccaaactttcaacataagccttgacagagaac 2584833  T

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Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 21642350 - 21642413
Alignment:
Q  8 ttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgatatatactatgc 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21642350 ttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgatatatactatgc 21642413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 337 - 404
Target Start/End: Original strand, 21642432 - 21642499
Alignment:
Q  337 cacaaatgtgttgacgtgctttctaaatgtcagaaaccaaactttcaacataaaccttggcagagaac 404  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21642432 cacaaatgtcttgacgtgctttctaaatgtcagaaaccaaactttcaacataaaccttggcagagaac 21642499  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 340 - 404
Target Start/End: Original strand, 21620765 - 21620829
Alignment:
Q  340 aaatgtgttgacgtgctttctaaatgtcagaaaccaaactttcaacataaaccttggcagagaac 404  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21620765 aaatgtcttgacgtgctttctaaatgtcagaaaccaaactttcaacataaaccttggcagagaac 21620829  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 28573327 - 28573439
Alignment:
Q  8 ttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgatatatactatgcattcatgcatggataataattcatatcattagaaca 107  Q
    |||||||||| ||||||| |||||||| ||||| ||||||||||| ||||| | |  ||| ||||||||| ||||||||||||||| ||||||||||||     
T  28573327 ttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgctctccactctgcattcattcatggataataattcttatcattagaact 28573426  T
Q  108 tgacatttaacaa 120  Q
    | |||||| ||||    
T  28573427 ttacattttacaa 28573439  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 28584557 - 28584665
Alignment:
Q  8 ttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgatatatactatgcattcatgcatggataataattcatatcattagaaca 107  Q
    |||||||||| ||||||| |||||||| ||||| ||||||||||| ||||||| |  ||| ||||||||| ||||    ||||||| ||||||||||||     
T  28584557 ttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatg----ataattcttatcattagaact 28584652  T
Q  108 tgacatttaacaa 120  Q
    | |||||||||||    
T  28584653 ttacatttaacaa 28584665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 28566582 - 28566690
Alignment:
Q  8 ttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgatatatactatgcattcatgcatggataataattcatatcattagaaca 107  Q
    |||||||||| ||||||| |||||||| ||||| ||||||||||| ||||||| |  ||| ||||||||| ||||    |||| || ||||||||||||     
T  28566582 ttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatg----ataactcttatcattagaact 28566677  T
Q  108 tgacatttaacaa 120  Q
    | |||||||||||    
T  28566678 ttacatttaacaa 28566690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 26314474 - 26314526
Alignment:
Q  8 ttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgat 60  Q
    |||||||||| ||||||| |||||||||||||| ||||||||||| |||||||    
T  26314474 ttggtgttcactcatgtagcaatcaagatatgaaccatcaagaccattttgat 26314526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 20615247 - 20615299
Alignment:
Q  8 ttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgat 60  Q
    |||||| ||| ||||||| |||| ||||||||||||||||||||| |||||||    
T  20615247 ttggtgctcactcatgtagcaattaagatatgatccatcaagaccattttgat 20615299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 404
Target Start/End: Complemental strand, 29157392 - 29157301
Alignment:
Q  313 tttcttcctttcatctaaccagcgcacaaatgtgttgacgtgctttctaaatgtcagaaaccaaactttcaacataaaccttggcagagaac 404  Q
    |||||||||||| || || || | ||||||||| |||||||||||||||||||  ||||||||| ||||||||| |||||||||||||||||    
T  29157392 tttcttcctttcctccaatcatcccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaac 29157301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 367 - 259
Alignment:
Q  12 tgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgatatatactatgcattcatgcatggataataattcatatcattagaacatgac 111  Q
    |||||| ||||||| |||||||||||||| || |||||||| ||||||| |  ||| ||||||||| ||| ||||||||||| |||||||||||| | ||    
T  367 tgttcactcatgtagcaatcaagatatgacccgtcaagaccattttgatctccactctgcattcattcattgataataattcttatcattagaactttac 268  T
Q  112 atttaacaa 120  Q
    |||| ||||    
T  267 attttacaa 259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 337 - 404
Target Start/End: Complemental strand, 46769691 - 46769624
Alignment:
Q  337 cacaaatgtgttgacgtgctttctaaatgtcagaaaccaaactttcaacataaaccttggcagagaac 404  Q
    ||||||||| ||||| |||||||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  46769691 cacaaatgtcttgacatgctttctaaatgtaagaaacaaaactttcaacgtaaaccttggcagagaac 46769624  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 20496089 - 20496040
Alignment:
Q  355 ctttctaaatgtcagaaaccaaactttcaacataaaccttggcagagaac 404  Q
    ||||| |||||||||||||||| |||||||||| ||||||||| ||||||    
T  20496089 ctttcaaaatgtcagaaaccaagctttcaacatgaaccttggcggagaac 20496040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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