View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7904_high_9 (Length: 306)

Name: NF7904_high_9
Description: NF7904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7904_high_9
NF7904_high_9
[»] chr3 (19 HSPs)
chr3 (20-295)||(22367941-22368216)
chr3 (33-261)||(22630465-22630694)
chr3 (33-261)||(22467975-22468203)
chr3 (20-229)||(22431187-22431396)
chr3 (25-261)||(22442758-22442994)
chr3 (20-261)||(22358016-22358257)
chr3 (33-261)||(22635530-22635758)
chr3 (33-254)||(22353837-22354059)
chr3 (20-240)||(22458503-22458723)
chr3 (20-240)||(22481484-22481704)
chr3 (20-178)||(22436648-22436806)
chr3 (64-205)||(30989363-30989504)
chr3 (68-204)||(22615330-22615466)
chr3 (56-230)||(22115327-22115501)
chr3 (56-202)||(21930691-21930837)
chr3 (56-138)||(22034851-22034933)
chr3 (20-197)||(22657080-22657257)
chr3 (68-204)||(18967049-18967185)
chr3 (56-136)||(22179753-22179833)
[»] chr1 (3 HSPs)
chr1 (20-197)||(34989492-34989669)
chr1 (82-197)||(34975657-34975772)
chr1 (83-197)||(34980437-34980551)
[»] chr4 (1 HSPs)
chr4 (145-210)||(29610706-29610771)
[»] chr5 (2 HSPs)
chr5 (80-136)||(40580264-40580320)
chr5 (20-123)||(40580337-40580440)
[»] scaffold1439 (1 HSPs)
scaffold1439 (83-174)||(1714-1805)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 22367941 - 22368216
Alignment:
Q  20 acttcaacaaaagaagatttcttacaagcatctgctacatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaatt 119  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22367941 acttcaacaaaagaagatttcttacaagcatctgcaacatcctcgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagaaaatt 22368040  T
Q  120 caatatcattccaaaaatgcgagtcccatacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttcc 219  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22368041 caatatcattccaaaaatgtgagtcccatacatcatcaaacactacaacgtacctttttccttgcaagtagtttctcacttcatcaactaataactttcc 22368140  T
Q  220 atccatttgatgaagactttgaggaggacctttcccttgttgcagtatgtccttcagcaatttttctttattatat 295  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22368141 atccatttgatgaagactttgaggaggacatttcccttgttgcagtatgtccttcagcaatttttctttattatat 22368216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 33 - 261
Target Start/End: Original strand, 22630465 - 22630694
Alignment:
Q  33 aagatttcttacaagcatctgctacatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattcca 132  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22630465 aagatttcttacaagcatctgcaacatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcatacca 22630564  T
Q  133 aaaatgcgagtcccatacatcatcaaacactac-aacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatg 231  Q
    ||| || |  ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  22630565 aaattgtgcctcccatacatcatcaaacactacaaacgtacctttttccttgcaagtagtttctcacttcatcaactaatggctttcgatccatttgatg 22630664  T
Q  232 aagactttgaggaggacctttcccttgttg 261  Q
     ||||||||||||||| |||||||||||||    
T  22630665 gagactttgaggaggatctttcccttgttg 22630694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 33 - 261
Target Start/End: Original strand, 22467975 - 22468203
Alignment:
Q  33 aagatttcttacaagcatctgctacatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattcca 132  Q
    |||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22467975 aagatttcttacaagcatctgcaacaaccttgtttctcgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcatacca 22468074  T
Q  133 aaaatgcgagtcccatacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatga 232  Q
    |||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||| |||||     
T  22468075 aaaatgtgaatcccatacatcatcaaacactataacatacctttttccttgcaagtagtttctcacttcatcaactaatggctttcgatccatctgatgg 22468174  T
Q  233 agactttgaggaggacctttcccttgttg 261  Q
    ||||| ||||||||| ||| |||||||||    
T  22468175 agactctgaggaggatcttccccttgttg 22468203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 22431187 - 22431396
Alignment:
Q  20 acttcaacaaaagaagatttcttacaagcatctgctacatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaatt 119  Q
    ||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22431187 acttcaacaaaagaagatttcttacaagcatctacaccatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaatt 22431286  T
Q  120 caatatcattccaaaaatgcgagtcccatacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttcc 219  Q
    ||||||||| ||||||||  || |||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| |||||| ||||     
T  22431287 caatatcataccaaaaatttgactcccatacatcatcaaacactacaacgtacctttttccttgcaagtagtttctcagtttatcaagtaataagtttcg 22431386  T
Q  220 atccatttga 229  Q
    ||||||||||    
T  22431387 atccatttga 22431396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 22442758 - 22442994
Alignment:
Q  25 aacaaaagaagatttcttacaagcatctgctacatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaata 124  Q
    ||||||||||||||||||||||| || ||| |||||| |||||||||| |||||||||||| || |||| ||||||||||||||||||||||||||||||    
T  22442758 aacaaaagaagatttcttacaagtatttgcaacatccatgtttcttgtagtgattaatatcctagaaccctttttgttatcaatcatagcaaattcaata 22442857  T
Q  125 tcattccaaaaatgcgagtcccatacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatcca 224  Q
    |||| | ||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || |||||    
T  22442858 tcatgcaaaaaatgtgactcccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatcca 22442957  T
Q  225 tttgatgaagactttgaggaggacctttcccttgttg 261  Q
    ||||||| ||||| ||||||||| |||||| ||||||    
T  22442958 tttgatggagactctgaggaggaactttcctttgttg 22442994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 22358016 - 22358257
Alignment:
Q  20 acttcaacaaaagaagatttcttacaagcatctgctacatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaatt 119  Q
    |||||||||||||||||||||||||||| ||  || |||||| |||||||||| |||||||||||| || |||| |||||||||||||||||||||||||    
T  22358016 acttcaacaaaagaagatttcttacaagtattcgcaacatccatgtttcttgtagtgattaatatcctagaaccctttttgttatcaatcatagcaaatt 22358115  T
Q  120 caatatcattccaaaaatgcgagtcccatacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttcc 219  Q
    ||||||||| | ||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||     
T  22358116 caatatcatgcaaaaaatgtgactcccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcg 22358215  T
Q  220 atccatttgatgaagactttgaggaggacctttcccttgttg 261  Q
    |||||||||| | ||||| ||||||||| |||||| ||||||    
T  22358216 atccatttgacggagactctgaggaggaactttcctttgttg 22358257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 33 - 261
Target Start/End: Original strand, 22635530 - 22635758
Alignment:
Q  33 aagatttcttacaagcatctgctacatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattcca 132  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||  |||    
T  22635530 aagatttattacaagcatttgcaacatccttttttcttgttgtgattaatatcctacaactatttttgttatcaatcatagcaaattcaatatcagacca 22635629  T
Q  133 aaaatgcgagtcccatacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatga 232  Q
    |||||| || |||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| |||||| ||||||||||||     
T  22635630 aaaatgtgactcccatacatcatcaaacactaaaacatacctttttccttgaaagtggtttctcacttcatcaactaatgactttcgatccatttgatgg 22635729  T
Q  233 agactttgaggaggacctttcccttgttg 261  Q
    ||||| | ||||||| ||| |||||||||    
T  22635730 agactctcaggaggaacttccccttgttg 22635758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 33 - 254
Target Start/End: Original strand, 22353837 - 22354059
Alignment:
Q  33 aagatttcttacaagcatctgctacatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattc-aatatcattcc 131  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||    
T  22353837 aagatttcttacaatcatctgtaacatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaaatatcttgcc 22353936  T
Q  132 aaaaatgcgagtcccatacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatg 231  Q
    ||||||| || ||| |||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||||    
T  22353937 aaaaatgtgactcctatacattatcaaacactacaacgtacctttttccttgcaagttgtttctcacttcatcaactaatggctttcgatccatttgatg 22354036  T
Q  232 aagactttgaggaggacctttcc 254  Q
     ||||| ||||||||| ||||||    
T  22354037 gagactctgaggaggatctttcc 22354059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 22458503 - 22458723
Alignment:
Q  20 acttcaacaaaagaagatttcttacaagcatctgctacatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaatt 119  Q
    |||||||||||||||||||||||||| |||| ||| |||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  22458503 acttcaacaaaagaagatttcttacatgcatttgcaacatccatgtttcttgttgtgattaatatcttacaaccctttttattatcaatcatagcaaatt 22458602  T
Q  120 caatatcattccaaaaatgcgagtcccatacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttcc 219  Q
      ||||||| |||||||||  ||  ||||||||||||||| |||| ||||||||||||| | ||||||||||| |||||||||||||| ||| ||| ||     
T  22458603 tgatatcatcccaaaaatgtaagctccatacatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcg 22458702  T
Q  220 atccatttgatgaagactttg 240  Q
    || ||||||||||| ||||||    
T  22458703 attcatttgatgaatactttg 22458723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 22481484 - 22481704
Alignment:
Q  20 acttcaacaaaagaagatttcttacaagcatctgctacatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaatt 119  Q
    |||||||||||||||||||||||||| |||| ||| |||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  22481484 acttcaacaaaagaagatttcttacatgcatttgcaacatccatgtttcttgttgtgattaatatcttacaaccctttttattatcaatcatagcaaatt 22481583  T
Q  120 caatatcattccaaaaatgcgagtcccatacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttcc 219  Q
      ||||||| |||||||||  ||  ||||||||||||||| |||| ||||||||||||| | ||||||||||| |||||||||||||| ||| ||| ||     
T  22481584 tgatatcatcccaaaaatgtaagctccatacatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcg 22481683  T
Q  220 atccatttgatgaagactttg 240  Q
    || ||||||||||| ||||||    
T  22481684 attcatttgatgaatactttg 22481704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 22436648 - 22436806
Alignment:
Q  20 acttcaacaaaagaagatttcttacaagcatctgctacatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaatt 119  Q
    |||||||||||||||||| ||||| ||| || ||| |||| | | || |||||||||||||||| |||| ||||||||  ||||||||||||||||||||    
T  22436648 acttcaacaaaagaagatctcttaaaagaatttgcaacattcattttccttgttgtgattaataccttagaaccatttaagttatcaatcatagcaaatt 22436747  T
Q  120 caatatcattccaaaaatgcgagtcccatacatcatcaaacactacaacataccttttt 178  Q
    ||||||||||||||| ||   ||| ||||||||| |||||||| ||||  |||||||||    
T  22436748 caatatcattccaaatatttaagttccatacatcgtcaaacacgacaaagtaccttttt 22436806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 30989363 - 30989504
Alignment:
Q  64 gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacact 163  Q
    ||||||||||||||| ||||||||||  |||||||| |||||||| | ||||||||||||||||| |||||||||      ||| ||||||||||||||     
T  30989363 gtttcttgttgtgataaatatcttacttccatttttattatcaattacagcaaattcaatatcatcccaaaaatgtacactccaaacatcatcaaacaca 30989462  T
Q  164 acaacatacctttttccttgcaagtagtttctcacttcatca 205  Q
    || ||||||||||||    |||||||||||||||||||||||    
T  30989463 acgacatacctttttaaccgcaagtagtttctcacttcatca 30989504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 22615330 - 22615466
Alignment:
Q  68 cttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacactacaa 167  Q
    |||||||| || ||||||||||  |||||||| |||||||| | |||| ||||||| |||||||||||||||  || |||||||||||||||||| ||||    
T  22615330 cttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttccatacatcatcaaacacaacaa 22615429  T
Q  168 catacctttttccttgcaagtagtttctcacttcatc 204  Q
    | ||||| |||   |||||||||||||| || |||||    
T  22615430 cgtacctcttttgctgcaagtagtttcttacctcatc 22615466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 230
Target Start/End: Complemental strand, 22115501 - 22115327
Alignment:
Q  56 acatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcat 155  Q
    |||||| ||||||||||||| || ||||||||||  ||||||||  ||||||| | || |||||||||||||| |||||||||    | ||| |||||||    
T  22115501 acatccatgtttcttgttgttataaatatcttacttccatttttactatcaattacagaaaattcaatatcatcccaaaaatgtacattccaaacatcat 22115402  T
Q  156 caaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgat 230  Q
    ||||||| ||||| ||||| |||   |||||||| |||||||||||||||  ||||||   || |||||||||||    
T  22115401 caaacacgacaacgtacctctttttctgcaagtattttctcacttcatcagttaataatcctcgatccatttgat 22115327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 56 - 202
Target Start/End: Complemental strand, 21930837 - 21930691
Alignment:
Q  56 acatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcat 155  Q
    |||||| |||| |||||||| || ||||||||||  ||||||||  |||||||   ||||||||||||||||| |||||||||    | ||| |||||||    
T  21930837 acatccatgttccttgttgttataaatatcttacttccatttttactatcaattgcagcaaattcaatatcatcccaaaaatgtacattccaaacatcat 21930738  T
Q  156 caaacactacaacatacctttttccttgcaagtagtttctcacttca 202  Q
    ||||||| ||||||||||| |||   |||||| | ||||||||||||    
T  21930737 caaacacgacaacatacctctttttctgcaagcattttctcacttca 21930691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 22034933 - 22034851
Alignment:
Q  56 acatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatg 138  Q
    |||||| ||||||||||||| || ||||||||||  ||||||||  ||||||| | || |||||||||||||| |||||||||    
T  22034933 acatccatgtttcttgttgttataaatatcttacttccatttttactatcaattacagaaaattcaatatcatcccaaaaatg 22034851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 22657080 - 22657257
Alignment:
Q  20 acttcaacaaaagaagatttcttacaagcatctgctacatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaatt 119  Q
    ||||||| |||||||||||||||||||    | || |||||| | ||||||||||| || ||||||||||  |||||||| | ||||   | |||| |||    
T  22657080 acttcaataaaagaagatttcttacaatacaccgcaacatccatatttcttgttgtaataaatatcttactcccatttttatgatcaccaacagcatatt 22657179  T
Q  120 caatatcattccaaaaatgcgagtcccatacatcatcaaacactacaacatacctttttccttgcaagtagtttctca 197  Q
    |||| |||| |||||||     || |||||||||||||||||| | ||||||||| |||   |||||||| |||||||    
T  22657180 caatctcatcccaaaaacttttgttccatacatcatcaaacacaaaaacatacctctttttctgcaagtattttctca 22657257  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 18967049 - 18967185
Alignment:
Q  68 cttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacactacaa 167  Q
    |||||||| || ||||| ||||  || ||||| |||||||| | | ||||||||||||||| |||||||||  |   ||| |||||||||||||| ||||    
T  18967049 cttgttgttatcaatatgttacttccttttttattatcaattacaacaaattcaatatcatcccaaaaatgtaaactccaaacatcatcaaacacaacaa 18967148  T
Q  168 catacctttttccttgcaagtagtttctcacttcatc 204  Q
    ||||||| ||  |  | ||||||||||| ||||||||    
T  18967149 catacctcttatcccgtaagtagtttcttacttcatc 18967185  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 22179833 - 22179753
Alignment:
Q  56 acatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaa 136  Q
    |||||| |||| |||||||| |||||||||||||  ||||||||  |||||||   |||| |||||| ||||| |||||||    
T  22179833 acatccatgttccttgttgttattaatatcttacttccatttttactatcaattgcagcagattcaacatcatcccaaaaa 22179753  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 34989669 - 34989492
Alignment:
Q  20 acttcaacaaaagaagatttcttacaag-catctgctacatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaat 118  Q
    ||||||| ||| |||||||||||||||  |||  || |||||||| |||||||| || || |||||||||| ||||||||| |||||| ||| | || ||    
T  34989669 acttcaataaatgaagatttcttacaatacatg-gcaacatccttatttcttgtggtaataaatatcttactaccatttttattatcactcacaacatat 34989571  T
Q  119 tcaatatcattccaaaaatgcgagtcccatacatcatcaaacactacaacatacctttttccttgcaagtagtttctca 197  Q
    ||||| |||| |||||||   | || |||||||||||||||||| | ||||||||| |||   |||||||| |||||||    
T  34989570 tcaatctcatcccaaaaacttgtgttccatacatcatcaaacacaaaaacatacctctttttctgcaagtactttctca 34989492  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 34975772 - 34975657
Alignment:
Q  82 tatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacactacaacatacctttttcct 181  Q
    |||||||| ||||||||| |||||| ||| | || ||||||| |||| |||||||   | || |||||||||||||||||| | ||||||||| |||       
T  34975772 tatcttactaccatttttattatcactcacaacatattcaatctcatcccaaaaacttgtgttccatacatcatcaaacacaaaaacatacctctttttc 34975673  T
Q  182 tgcaagtagtttctca 197  Q
    |||||||| |||||||    
T  34975672 tgcaagtactttctca 34975657  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 34980551 - 34980437
Alignment:
Q  83 atcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacactacaacatacctttttcctt 182  Q
    ||||||| ||||||||| |||||| ||| | || ||||||| |||| |||||||   | || |||||||||||||||||| | ||||||||| |||   |    
T  34980551 atcttactaccatttttattatcactcacaacatattcaatctcatcccaaaaacttgtgttccatacatcatcaaacacaaaaacatacctctttttct 34980452  T
Q  183 gcaagtagtttctca 197  Q
    ||||||| |||||||    
T  34980451 gcaagtaatttctca 34980437  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 29610706 - 29610771
Alignment:
Q  145 ccatacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaa 210  Q
    ||||||||| |||||||||||||  ||||||||  | |||||||| |||||||||||||| |||||    
T  29610706 ccatacatcgtcaaacactacaaggtaccttttctcctgcaagtaatttctcacttcatcgactaa 29610771  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 40580320 - 40580264
Alignment:
Q  80 aatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaa 136  Q
    |||||||||| ||||||||| |||||| |||||||| |||||||||||  |||||||    
T  40580320 aatatcttactaccatttttattatcactcatagcatattcaatatcaccccaaaaa 40580264  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 40580440 - 40580337
Alignment:
Q  20 acttcaacaaaagaagatttcttacaagcatctgctacatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaatt 119  Q
    ||||||| ||||||| |||||||||||    |||| |||||| |  ||||||  || || |||||||||| ||||||||| |||||| |||||||| |||    
T  40580440 acttcaataaaagaaaatttcttacaatacactgcaacatccatacttcttgaggtaataaatatcttactaccatttttattatcactcatagcatatt 40580341  T
Q  120 caat 123  Q
    ||||    
T  40580340 caat 40580337  T

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Target: scaffold1439 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1439
Description:

Target: scaffold1439; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 1714 - 1805
Alignment:
Q  83 atcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacactacaacatacct 174  Q
    ||||||| ||||||||| |||||| ||| | || ||||||| |||| |||||||   | || |||||||||||||||||| | |||||||||    
T  1714 atcttactaccatttttattatcactcacaacatattcaatctcatcccaaaaacttgtgttccatacatcatcaaacacaaaaacatacct 1805  T

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