View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7904_low_1 (Length: 660)

Name: NF7904_low_1
Description: NF7904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7904_low_1
NF7904_low_1
[»] chr4 (1 HSPs)
chr4 (14-660)||(37534321-37534963)


Alignment Details
Target: chr4 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 14 - 660
Target Start/End: Complemental strand, 37534963 - 37534321
Alignment:
Q  14 aatattacaaggagaaaacaaatcttcaggtttgcaggaacatgaacccttttccaccattctttcttgttccgatttcatagtactgctctttaccctg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  37534963 aatattacaaggagaaaacaaatcttcaggtttgcaggaacatgaacccttttccaccattctttcttgttctgatttcatagtactgatctttaccctg 37534864  T
Q  114 agcacaatgactcctcacgtaatcggcagtttaacgtttcttttgatacaatatatagtttgtgaagtaatgtcttactatcggactgtattgcaaactg 213  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37534863 agtacaatgactcctcacgtaatcggcagtttaacgtttcttttgatacaatatatagtttgtgaagtaatgtcttactatcggactgtattgcaaactg 37534764  T
Q  214 atcctaagtttgtcacaagcatagagcactatccgctatctgtttcgacaaattcatcccacatgttatcttgaagctgtaacaccaaaacagttgttta 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37534763 atcctaagtttgtcacaagcatagagcactatccgctatctgtttcgacaaattcatcccacatgttatcttgaagctgtaacaccaaaacagttgttta 37534664  T
Q  314 gaacaattacttgcaataacctgtatcaataacataataactcctcacaaacatatcaccaaatctattaaagaaataaataaattttctaattgtttca 413  Q
    |||||||||||   |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  37534663 gaacaattact---aataacctgtatcaataacataataactccgcacaaacatatcaccaaatccattaaagaaagaaataaattttctaattgtttca 37534567  T
Q  414 catatttcaaaatatacagagagagaaaagtgactcaaataaattacaggaaaaaagcatttatccttcaatgacaattttgagaaatatatttataatg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37534566 catatttcaaaatatacagagagagaaaagtgactcaaataaattacaggaaaaaagcatttatccttcaatgacaattttgagaaatatatttataatg 37534467  T
Q  514 ctcccataaaattttctcagttagacaccctgaaataaaagcccttcgagcttggagggtggacaatgcatagcatagcctgcctgccnnnnnnnnnaaa 613  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |    
T  37534466 ctcccataaaaatttctcagttagacaccctgaaataaaagcccttcgagcttggagggtggacaatgcatagcatagcctgcctgccttttttttt-ta 37534368  T
Q  614 aatcatttaaacttaatagaagaatggggacaaaaaggatgaaattt 660  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  37534367 aatcatttaaacttaatagaagaatggggacaaaaaggatgaaattt 37534321  T

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