View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7904_low_11 (Length: 290)
Name: NF7904_low_11
Description: NF7904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7904_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 47737461 - 47737189
Alignment:
| Q |
1 |
gagacaaattgtgttgtcaagaggaacaaaggtaaagaaactgatgaaaccttgtcttttacacagtccaaggataatataaagatgtcgcatgatcgga |
100 |
Q |
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| T |
47737461 |
gagacaaattgtgttgtcaagaggaacaaaggtaaagaaactgatgaaaccttgtcttttacacagtccaaggataatataaagatgtcgcatgatcgga |
47737362 |
T |
|
| Q |
101 |
acaaaggaaaacaacaacgttacgctcttgtctcgtttatggagctaccgaattatatgaaggataatgaatatattttacgttattatagagccaattg |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47737361 |
acaaaggaaaacaacaacgttactctcttgtctcgtttatggaactaccgaattatatgaaggataatgaatatattttacgttattatagagccaattg |
47737262 |
T |
|
| Q |
201 |
gcctttgaaagaagctttcttcagtctctttcgttggcataatgaaactttgaatgtttggacgtaagttttt |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47737261 |
gcctttgaaagaagctttcttcagtctctttcgttggcataatgaaactttgaatgtttggacgtaagttttt |
47737189 |
T |
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