View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7904_low_14 (Length: 265)
Name: NF7904_low_14
Description: NF7904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7904_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 2105009 - 2104745
Alignment:
| Q |
1 |
aagaaaatttacctctctttttccactgctcgtgatttctc---------------aactccaattccagctctaatgtgtttgttagagtccacagtac |
85 |
Q |
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| T |
2105009 |
aagaaaatttacctctctttttccactgctcgtgatttctctctctatgatttttcaactccaattccaggtctaatgtgtttgttagagtccacagtac |
2104910 |
T |
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| Q |
86 |
tatactatatagtaaaattgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccagaataaattctttacgacaacaactat |
185 |
Q |
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| T |
2104909 |
tatactatatagtaaaattgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccagaataaattctttactacaacaactat |
2104810 |
T |
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| Q |
186 |
ggacagtaataaaaactaaccaaggtaaatgtaataaagagcatggcagtaataatggctatcct |
250 |
Q |
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| T |
2104809 |
ggacagtaataaaaactaaccaaggtaaatgtaataaagagcatggcagtaataatggctatcct |
2104745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 2096147 - 2096001
Alignment:
| Q |
33 |
tgatttctcaactccaattccagctctaatgtgtttgttagagtccacagtacta----tactata--tagtaaaattgatcggtttgttataacaaatt |
126 |
Q |
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| T |
2096147 |
tgatttttcaactccaagtctagctctaatgtgtttgttagagtccgcagtagtagtagtagtataaatagtaaaactgatcggtttgttataacaaatt |
2096048 |
T |
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| Q |
127 |
ctgaaaccggatttcaaattttttattaaccagaataaattctttac |
173 |
Q |
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| T |
2096047 |
ctgaaaccggatttcaaattttttattaaccagagtaaattctttac |
2096001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 2052826 - 2052765
Alignment:
| Q |
99 |
aaaattgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccaga |
160 |
Q |
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| T |
2052826 |
aaaactgatcggtttgttataacaaattctgaaaccggatttcaaataatttatgaaccaga |
2052765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 2085947 - 2085878
Alignment:
| Q |
181 |
actatggacagtaataaaaactaaccaaggtaaatgtaataaagagcatggcagtaataatggctatcct |
250 |
Q |
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| T |
2085947 |
actatggacagtaataaaaaccaaccatggtaaatgtaataatgagcatggcagaaataatagcaatcct |
2085878 |
T |
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