View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7904_low_3 (Length: 563)
Name: NF7904_low_3
Description: NF7904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7904_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 181 - 545
Target Start/End: Complemental strand, 16306632 - 16306268
Alignment:
| Q |
181 |
gttcatagaaattgtgtttgcgaggcaacagttgctcaatagcaaccgttgttgtaaatattagtgtagaagttttgctctgtgaaacatagacacgaca |
280 |
Q |
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| T |
16306632 |
gttcatagaaattgtgtttgcgaggcaacagttgctcaatagcaaccgttgttgtaaatattagtgtagaagttttgctctgtgaaacatagacacgaca |
16306533 |
T |
|
| Q |
281 |
ttgacgcgtcgacactaataataatttaagaaaatgaaatagttgatagaagtacatgtgtcggtgttatgtaagacatgaaacacgttttcaatgtgaa |
380 |
Q |
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| T |
16306532 |
ttgacgcgtcgacactaataataatttaaaaaaatgaaatagttgatagaagtacatgtgtcagtgttatgtaagacatgaaacacgttttcaatgtgaa |
16306433 |
T |
|
| Q |
381 |
gtgttggggctacatagattttgcttaagggcttgatctagcattaatattcataaacttaaacttggtcatagttataggaattgagttctgaatgcat |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16306432 |
gtgttggggctacatagattttgcttaagggcttgatctagcattaatattcataaacttaaacttggtcatagttataggaattgagttctgaatgcat |
16306333 |
T |
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| Q |
481 |
ccatgatattcattagctactaagaagttcacaaccaattctttgaaagtaaataaagctattag |
545 |
Q |
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| T |
16306332 |
ccatgatagtcattagctactaagaagttcacaaccaattctttgaaagtaaataaagctattag |
16306268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 16306803 - 16306691
Alignment:
| Q |
10 |
ctggaaatgaacagaccatacaaaaataaaagagaaggaaattttcttaagcttattgaacagacctacaagacttctatttgaaactgtgtaaaccagt |
109 |
Q |
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| T |
16306803 |
ctggaaatgaacagaccatacaaaaataaaagagaaggaaattttcttaagcttattgaacagacctacaagacttctatttgaaactgtgtaaaccagt |
16306704 |
T |
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| Q |
110 |
ttctcatgtagag |
122 |
Q |
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| T |
16306703 |
ttctcatgtagag |
16306691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 17930445 - 17930489
Alignment:
| Q |
273 |
acacgacattgacgcgtcgacactaataataatttaagaaaatga |
317 |
Q |
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| T |
17930445 |
acacgacattgacacgtcgacaccaatactaatttaagaaaatga |
17930489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 326
Target Start/End: Complemental strand, 26462708 - 26462669
Alignment:
| Q |
287 |
cgtcgacactaataataatttaagaaaatgaaatagttga |
326 |
Q |
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| T |
26462708 |
cgtcgacactgataataatttaagaaaatgaaataattga |
26462669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 319
Target Start/End: Complemental strand, 30585160 - 30585132
Alignment:
| Q |
291 |
gacactaataataatttaagaaaatgaaa |
319 |
Q |
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| T |
30585160 |
gacactaataataatttaagaaaatgaaa |
30585132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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