View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7904_low_6 (Length: 488)
Name: NF7904_low_6
Description: NF7904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7904_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 13779998 - 13779705
Alignment:
| Q |
1 |
cccactttgaaccaaacaaactgttttgaatcccaaacatgacctaattaccttatttagttgctggaattacacgaggtcgggcacaaccttactacat |
100 |
Q |
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| T |
13779998 |
cccactttgaaccaaacgaactgttttgaatcccaaacatgacctaattaccttatttagttgctggaattacacgaggtcggacacaaccttactacat |
13779899 |
T |
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| Q |
101 |
gtctctttcgaaacaaatagtaacgatccatgcaaggcctaacagtggtaagatgcagaccatgataattcctatgttacttgcgcccacttcttcgatg |
200 |
Q |
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| T |
13779898 |
gtctcttttgaaacaaatagtaacgatccatgcaaggcctaacagtggtaagatgcagaccatgataattcctacattacttgcgcccacttcttcgatg |
13779799 |
T |
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| Q |
201 |
ttgataatggtaactagaaagaaaataaatacaaacaaagtaatccagatgagaaaaaacttatccattttttgaactgtcaacaaattgttta |
294 |
Q |
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| T |
13779798 |
ttgataatggtaactagaaagaaaataaatacaaacaaagtaatctagatgagaaaaaacttatccattttttgtactgtgaacaaattgttta |
13779705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 299 - 472
Target Start/End: Complemental strand, 13777482 - 13777314
Alignment:
| Q |
299 |
ttcatacctcatttaattagatttaaaattacaattgaagttgaagcttgcaaaccaatgttaaggtaagaaaggtgaacaaaaaagttgtctctctaca |
398 |
Q |
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| T |
13777482 |
ttcatacctcatttaattagatttaaaattacaattgaagttgaagcttgcaaaccaatgttaaggtaagaaaggtgaacaaaaatgttgtctccc---- |
13777387 |
T |
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| Q |
399 |
acactttttcactcagttttgtcaagagctattgtccttttctgcttcttcaaacgcaatgttgaagttgttac |
472 |
Q |
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| T |
13777386 |
-cactttttcactcagttttgtcaagagctattgtccttttctgcttcttcaaacgcaatgttgaagttgttac |
13777314 |
T |
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