View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7904_low_8 (Length: 400)
Name: NF7904_low_8
Description: NF7904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7904_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 21 - 379
Target Start/End: Complemental strand, 32726589 - 32726222
Alignment:
| Q |
21 |
cacggatgaggaagaagaagaaatggaaacaacaac---------aacaacgacaataaaaacgcaagaagttggtgatgattcaaaagggctaaaacta |
111 |
Q |
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| T |
32726589 |
cacggatgaggaagaagaagaaatggaaacaacaaccacaacaacaacaacggcaataaaaacgcatgaagttggtgatgattcaaaagggctaaaacta |
32726490 |
T |
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| Q |
112 |
gtgcacctattgatggctggcgcggaagccttaaccggttcaaccaaaaaccgtgacttagctcgagtgatattgatccggctcaaggaattagtctcac |
211 |
Q |
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| T |
32726489 |
gtgcacctattgatggctggcgcggaagccttaaccggttcaaccaaaaaccgtgacttagctcgagtgatattgatccggctcaaggaattagtctcac |
32726390 |
T |
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| Q |
212 |
aacatgctaacggctccaacatggagagacttgccgctcatttcaccgaagcccttcatggactactagaaggtgctgggggtgcgcataataaccacca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32726389 |
aacatgctaacggctccaacatggagagacttgccgctcatttcaccgaagcccttcatggactactagaaggtgctgggggtgcgcataataaccacca |
32726290 |
T |
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| Q |
312 |
tcaccacaacaacaacaaacattacctcaccacaaatggtccccgcgacaaccaaaacgacacacttg |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32726289 |
tcaccacaacaacaacaaacattacctcaccacaaatggtccccacgacaaccaaaacgacacacttg |
32726222 |
T |
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