View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7905_low_1 (Length: 596)
Name: NF7905_low_1
Description: NF7905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7905_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Complemental strand, 40931379 - 40930802
Alignment:
| Q |
1 |
tcaactactttttcctaaataatgaatatggaaacgataatttactggagatggaaagtggcaaaatttttacctctccaaattgtcgttctatccttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40931379 |
tcaactactttttcctaaataatgaatatggaaacgataatttactggagatggaaagtggcaaaatttttacctctccaaattgtcgttctatccttcc |
40931280 |
T |
|
| Q |
101 |
cacgacatttaaaaaatggannnnnnngagaacttagtttccgttttatcttgccgccgtaaatgacatcgaatcactgcaccaccgtctcagtcctttc |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40931279 |
cacgacatttaaaaaatggatttttttgagaacttagtttccgttttatcttgccgccgtaaatgacatcgaatcactgcaccaccgtctcagtcctttc |
40931180 |
T |
|
| Q |
201 |
tctacgaaatcgttacttcacgttgacattgacaaggctttcgccgcttccgtcacatatagttttcacctttcaaacttgtaaacgtcctccgcgaagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40931179 |
tctacgaaatcgttacttcacgttgacattgacaaggctttcgccgcttccgtcacatatagttttcacctttcaaacttgtaaacgtcctccgcgaagc |
40931080 |
T |
|
| Q |
301 |
cgacgccgatcaaaacggtggtagcgcgataattcatggtttcatctctaaatcaattgaatttctgtttggatctagattcgatcagttgttgtagcag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40931079 |
cgacgccgatcaaaacggtggtagcgcgataattcatggtttcatctctaaatcaattgaatttctgtttggatctagattcgatcagttgttgtagcag |
40930980 |
T |
|
| Q |
401 |
tttctacaatatgttatcgccgctgttttgaagtttctgtttggatctagatttaatcagttgctggagcagtttttgtaagcggagatgaacagcttct |
500 |
Q |
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| T |
40930979 |
tttctacaatatgttatcgccgctgttttgaagtttctgtttggatctagatttaatcagttgctggagcagtttttgtaagcggagatgaacagcttct |
40930880 |
T |
|
| Q |
501 |
taaccgctggagaatgcgccggcgtaaaaaacaccttaagcttgaacggaagatggtggttttcgccggaggtgtaat |
578 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40930879 |
taaccgctggagaatgcgccggcgtaaaaaacaccttaagcttgaacggaagatggtggttttcgccggaggtgtaat |
40930802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 312; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 185 - 571
Target Start/End: Original strand, 33808134 - 33808514
Alignment:
| Q |
185 |
ccgtctcagtcctttctctacgaaatcgttacttcacgttgacattgacaaggctttcgccgcttccgtcacatatagttttcacctttcaaacttgtaa |
284 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||| ||||||||| ||||||| |
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| T |
33808134 |
ccgtctcagtcctttctcgacgaaatcgttacttcacgttga------caaggctttcgccgctgccgtcacataaagtttcaacctttcaaccttgtaa |
33808227 |
T |
|
| Q |
285 |
acgtcctccgcgaagccgacgccgatcaaaacggtggtagcgcgataattcatggtttcatctctaaatcaattgaatttctgtttggatctagattcga |
384 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33808228 |
acgtcctccgcgaagccgacgccgatcaagacggtggtagcgcgataattcatggtttcatctctaaatcaattgaatttctgtttggatctagattcga |
33808327 |
T |
|
| Q |
385 |
tcagttgttgtagcagtttctacaatatgttatcgccgctgttttgaagtttctgtttggatctagatttaatcagttgctggagcagtttttgtaagcg |
484 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33808328 |
tcagttgttgtagcagtttctacaatatgttatcgccactgttttgaagattctgtttggatctagatttaatcagttgctggagcagtttttgtaagcg |
33808427 |
T |
|
| Q |
485 |
gagatgaacagcttcttaaccgctggagaatgcgccggcgtaaaaaacaccttaagcttgaacggaagatggtggttttcgccggag |
571 |
Q |
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| T |
33808428 |
gagatgaatgacttcttaacggctggagaatgcgccggcgtaaaaaacaccttaagcttgaacggaagatggtggttttcgccggag |
33808514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 8278777 - 8278877
Alignment:
| Q |
1 |
tcaactactttttcctaaataatgaatatggaaacgataatttactggagatggaaagtggcaaaatttttacctctccaaattgtcgttctatccttcc |
100 |
Q |
| |
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|||||||| |||||||||||||||| ||| |||| || | |||| |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| |
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| T |
8278777 |
tcaactacattttcctaaataatgattattgaaatgaca-tttattggagatggaaagtggcaaaatttctacctctccaaattgtcattctgtccttcc |
8278875 |
T |
|
| Q |
101 |
ca |
102 |
Q |
| |
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|| |
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|
| T |
8278876 |
ca |
8278877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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