View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7905_low_10 (Length: 234)
Name: NF7905_low_10
Description: NF7905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7905_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 2517474 - 2517331
Alignment:
| Q |
73 |
agcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgtctcagctgcttctggtgcag |
172 |
Q |
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| T |
2517474 |
agcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgtttcagctgcttctggtgcag |
2517375 |
T |
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| Q |
173 |
ttggtcaacttgttggacaatttgctaaattgcatggttgctat |
216 |
Q |
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| T |
2517374 |
ttggtcaacttgttggacaatttgctaaattgcatggttgctat |
2517331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 1458972 - 1459112
Alignment:
| Q |
76 |
acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgtctcagctgcttctggtgcagttg |
175 |
Q |
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| T |
1458972 |
acaggtatgcctggaatgactgcttatgctggtttctttgaagtaggctctcctaagaaaggagagaatgtttttgtttcagctgcctctggtgcagttg |
1459071 |
T |
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| Q |
176 |
gtcaacttgttggacaatttgctaaattgcatggttgctat |
216 |
Q |
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| T |
1459072 |
gtcaacttgttggccaattcgctaaattgcatggttgctat |
1459112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 2428679 - 2428819
Alignment:
| Q |
76 |
acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgtctcagctgcttctggtgcagttg |
175 |
Q |
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| T |
2428679 |
acaggtatgcctggaatgactgcttatgctggtttctttgaagtaggctctcctaagaaaggagagaatgtttttgtttcagctgcctctggtgcagttg |
2428778 |
T |
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| Q |
176 |
gtcaacttgttggacaatttgctaaattgcatggttgctat |
216 |
Q |
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| T |
2428779 |
gtcaacttgttggccaattcgctaaattgcatggttgctat |
2428819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 76 - 216
Target Start/End: Complemental strand, 2513111 - 2512971
Alignment:
| Q |
76 |
acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgtctcagctgcttctggtgcagttg |
175 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||| ||||||| |
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| T |
2513111 |
acaggtatgccaggaatgactgcttattctggtttctttgaagtaggctctcccaagaaaggagagaatgtttttgtttcagctgcctctggagcagttg |
2513012 |
T |
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| Q |
176 |
gtcaacttgttggacaatttgctaaattgcatggttgctat |
216 |
Q |
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| T |
2513011 |
gtcaacttgttggccaattcgctaaattgcatggttgctat |
2512971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 77 - 215
Target Start/End: Complemental strand, 2506497 - 2506359
Alignment:
| Q |
77 |
caggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgtctcagctgcttctggtgcagttgg |
176 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| || | || |||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
2506497 |
caggtatgccaggaatgactgcttatgctggtttctttgaagtaggcgctaccaagaaaggagagaatgtttttgtttcagctgcctctggtgcagttgg |
2506398 |
T |
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| Q |
177 |
tcaacttgttggacaatttgctaaattgcatggttgcta |
215 |
Q |
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| T |
2506397 |
tcaacttgttggccaattcgctaaattgcatggttgcta |
2506359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 2497772 - 2497646
Alignment:
| Q |
75 |
cacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgtctcagctgcttctggtgcagtt |
174 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||| ||||| ||| || |||||||||| ||||||||| |||||||| ||||||||||| |
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| T |
2497772 |
cacaggtatgccaggaataactgcttatgctggtttctttgaactaggcagtcctaagaaaggagagactgtttttgtttcagctgcctctggtgcagtc |
2497673 |
T |
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| Q |
175 |
ggtcaacttgttggacaatttgctaaa |
201 |
Q |
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|||||||||||||| ||||| |||||| |
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| T |
2497672 |
ggtcaacttgttggtcaattcgctaaa |
2497646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 76 - 212
Target Start/End: Original strand, 2435046 - 2435182
Alignment:
| Q |
76 |
acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgtctcagctgcttctggtgcagttg |
175 |
Q |
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||||||||||| |||||||| || |||||||||||||||||| ||||| ||| || |||||||||||||||| ||| |||||||| || ||||| |||| |
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| T |
2435046 |
acaggtatgccgggaatgactgcatatgctggtttctttgaattaggcagtcctaagaaaggagagaatgtttatgtttcagctgcatccggtgctgttg |
2435145 |
T |
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| Q |
176 |
gtcaacttgttggacaatttgctaaattgcatggttg |
212 |
Q |
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|||||||||| || |||||||| ||| |||||||||| |
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| T |
2435146 |
gtcaacttgtaggtcaatttgcaaaactgcatggttg |
2435182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 76 - 212
Target Start/End: Original strand, 2431656 - 2431792
Alignment:
| Q |
76 |
acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgtctcagctgcttctggtgcagttg |
175 |
Q |
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|||||||||| ||| |||| || |||| ||||||||||||| ||||| ||| || |||||||| ||||||| ||| ||||| || || |||| |||| |
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| T |
2431656 |
acaggtatgctgggattgactgcatatgttggtttctttgaattaggcagtcctaagaaaggagaaaatgtttatgtttcagcggcatccagtgctgttg |
2431755 |
T |
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| Q |
176 |
gtcaacttgttggacaatttgctaaattgcatggttg |
212 |
Q |
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||||||||||||| |||||||| |||||||||||||| |
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| T |
2431756 |
gtcaacttgttggccaatttgcaaaattgcatggttg |
2431792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 946231 - 946137
Alignment:
| Q |
122 |
gctctccgaaaaaaggagagaatgtttttgtctcagctgcttctggtgcagttggtcaacttgttggacaatttgctaaattgcatggttgctat |
216 |
Q |
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||||||| |||| ||||| |||||||||| ||||| || || ||||| || |||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
946231 |
gctctcccaaaagtggagaatatgtttttgtttcagcagcatcaggtgctgtgggtcaacttgttggtcaacttgctaaattgcatggttgctat |
946137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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