View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7905_low_3 (Length: 433)
Name: NF7905_low_3
Description: NF7905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7905_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 13615626 - 13615374
Alignment:
| Q |
18 |
gaatgaacggtgtggatgaaaccatgttggtaatggatccatttgaagaagtttagggcggtgagagggtggagattggggttgttgaagagagaagaga |
117 |
Q |
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| T |
13615626 |
gaatgaacggtgtggatgaaaccatgttggtaatggatccatttgaagaagtttagggcggtgagagggtggagattggggttgttgaagagagaagaga |
13615527 |
T |
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| Q |
118 |
gatgggttggggttaaagatgggattaaggtgttaaaggatggatttttacgccattggggttgtgagagaatggtgaagatctgtgaaggaagatcttg |
217 |
Q |
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| T |
13615526 |
gatgagttggggttaaagatgggattaaggtgttaaaggatggatttttacgccattggggttgtaagagaatggtgaagatctgtgaaggaagatcttg |
13615427 |
T |
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| Q |
218 |
ctggagagagttgggagagagagatgaaaagggtttaaggagaagatgaaaaa |
270 |
Q |
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| T |
13615426 |
ttggagagagttgggagagagagatgaaaagggtttaaggagaagatgaaaaa |
13615374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 299 - 418
Target Start/End: Complemental strand, 13615351 - 13615235
Alignment:
| Q |
299 |
atggtggagaagggtgaaaaggggtttagattttctcatttaaaagccatcaacaagaagaaagggttttgttttgtgttggggtttatgtattattcat |
398 |
Q |
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| T |
13615351 |
atggtggagaagagtgaaaaggggcttagattttctcatttaaaagccatcaacaagaagaaagggttttgttttgtgttggggtttatg---tattcat |
13615255 |
T |
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| Q |
399 |
ttggaagagggttttgttat |
418 |
Q |
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| T |
13615254 |
ttggaagagggttttgttat |
13615235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 301 - 417
Target Start/End: Original strand, 21748036 - 21748149
Alignment:
| Q |
301 |
ggtggagaagggtgaaaaggggtttagattttctcatttaaaagccatcaacaagaagaaagggttttgttttgtgttggggtttatgtattattcattt |
400 |
Q |
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| T |
21748036 |
ggtggagaagagtgaaaaggggtttagattttctcatttaaaagtcatcaacaagaagaaagggttttgttttgtgttggggtttatg---tgttcattt |
21748132 |
T |
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| Q |
401 |
ggaagagggttttgtta |
417 |
Q |
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| T |
21748133 |
ggaagagggttttgtta |
21748149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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