View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7905_low_4 (Length: 334)

Name: NF7905_low_4
Description: NF7905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7905_low_4
NF7905_low_4
[»] chr1 (1 HSPs)
chr1 (18-319)||(8118472-8118759)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 8118759 - 8118472
Alignment:
Q  18 attaacataagagacaatttggtcaacaaaaatatcgaaacattatgaactataaaaagtttatattgtttaattgaattgtaaaattacctgaaattga 117  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8118759 attaaaataagagacaatttgatcaacaaaaatatcgaaacattatgaactataaaaagtttattttgtttaattgaattgtaaaattacctgaaattga 8118660  T
Q  118 tagatgaagtgctaataagaatgaaaaaattgataggtgatccatgtatatatatgttgaagctatctagctaagcttcaaaagcttatgcttaatatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8118659 tagatgaagtgctaataagaatgaaaaaattgataggtgatccatgtatatatatgttgaagctatctagctaagcttcaaaagcttatgcttaatatga 8118560  T
Q  218 agaatgtgaataggggtaaggatatgagagaaaagaaatgggagaataagttatgaaagnnnnnnnctttgtataaaaggggagagagttatgagatttg 317  Q
    ||||||||||||||||||||||||||||              |||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  8118559 agaatgtgaataggggtaaggatatgag--------------agaataagttatgaaagtttttttctttgtataaaaggggagagagttatgagatttg 8118474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University