View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7905_low_5 (Length: 256)
Name: NF7905_low_5
Description: NF7905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7905_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 11063121 - 11062881
Alignment:
| Q |
1 |
ctaaagttcgatcgaagaataaataaactcttataaaa-gattattcgaccaaaacattta-------tttattttaaataatttctatttcgttgaagt |
92 |
Q |
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| T |
11063121 |
ctaaagttcgatccaaggataaataaactcttataaaaagattattcgaccaaaaaatcgagctcaattttttttaaaataatttctatttcgttgaagt |
11063022 |
T |
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| Q |
93 |
ttatgaaacattttgagtccaattatttaattattatagctcttaactacttgttgccaatagaccaacacatcacgacttccttttatatccacacata |
192 |
Q |
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| T |
11063021 |
ttatgaaacattttgagtccaattatttaattattatagctcttaactacttgttgccaatagaccaacacatcacgacttccttttatatccacacata |
11062922 |
T |
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| Q |
193 |
ctattaacacaaaattatacatccaagttttctcctcatca |
233 |
Q |
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| T |
11062921 |
ctattaacagaaaattatacatctaagttttctcctcatca |
11062881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 11020976 - 11020912
Alignment:
| Q |
183 |
tccacacatactattaacacaaaattatacatccaagttttctcctcatcacaagtgtgaacacca |
248 |
Q |
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| T |
11020976 |
tccacacatactactaacaccaa-ttatacatacaatttttctcctcatcataagtgtaaacacca |
11020912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 246
Target Start/End: Complemental strand, 11062857 - 11062828
Alignment:
| Q |
217 |
aagttttctcctcatcacaagtgtgaacac |
246 |
Q |
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| T |
11062857 |
aagttttctcctcatcacaagtgtgaacac |
11062828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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