View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7905_low_6 (Length: 249)

Name: NF7905_low_6
Description: NF7905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7905_low_6
NF7905_low_6
[»] chr5 (2 HSPs)
chr5 (2-236)||(41900623-41900857)
chr5 (137-236)||(32268228-32268327)
[»] chr8 (3 HSPs)
chr8 (108-234)||(27922867-27922993)
chr8 (183-225)||(18314971-18315013)
chr8 (189-225)||(14003817-14003853)
[»] chr4 (2 HSPs)
chr4 (183-231)||(1601177-1601225)
chr4 (48-81)||(53761012-53761045)
[»] chr3 (1 HSPs)
chr3 (44-79)||(13469868-13469903)
[»] chr1 (1 HSPs)
chr1 (183-235)||(19467780-19467832)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 41900623 - 41900857
Alignment:
Q  2 ctcagataccccacacaatgcaattatgatgagctagaggagcttgcactttttaaactccgtaaggttaatctttctggtcattatcatgttgacaaat 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41900623 ctcagataccccacacaatgcaattatgatgagctagaggagcttgcactttttaaactccgtaaggttaatctctctggtcattatcatgttgacaaat 41900722  T
Q  102 taattttccagttgttcaaaaattgtaagtttcttgaagaggccatcttgttaacatgttttgatacaacctttgatggtcttgcttttgctctccgcca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  41900723 taattttccagttgttcaaaaattgtaagtttcttgaagaggccatcttgttgacatgttttgatacaacctttgatggtcttgcttctgctctccgcca 41900822  T
Q  202 gagaccaacattgaggtctttatcattttccaata 236  Q
    |||||||||||||||||||||||||||||||||||    
T  41900823 gagaccaacattgaggtctttatcattttccaata 41900857  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 32268327 - 32268228
Alignment:
Q  137 gaagaggccatcttgttaacatgttttgatacaacctttgatggtcttgcttttgctctccgccagagaccaacattgaggtctttatcattttccaata 236  Q
    |||||||||||| ||||  ||||| |||| | |||||||| |||| |||||  ||| |||||  |||||||||||||||||||| |||| ||||||||||    
T  32268327 gaagaggccatcatgttgccatgtgttgacataacctttgttggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttccaata 32268228  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 234
Target Start/End: Complemental strand, 27922993 - 27922867
Alignment:
Q  108 tccagttgttcaaaaattgtaagtttcttgaagaggccatcttgttaacatgttttgatacaacctttgatggtcttgcttttgctctccgccagagacc 207  Q
    |||| |||||||||| ||||||| |||| |||||||| ||| ||||    |||||||| | ||||||||||||  |||||   ||||| ||| |||||||    
T  27922993 tccatttgttcaaaagttgtaaggttctcgaagaggctatcatgttgcactgttttgacataacctttgatggaattgctaaagctctgcgcgagagacc 27922894  T
Q  208 aacattgaggtctttatcattttccaa 234  Q
    ||| |||||||||||||||||||||||    
T  27922893 aaccttgaggtctttatcattttccaa 27922867  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 18314971 - 18315013
Alignment:
Q  183 ttgcttttgctctccgccagagaccaacattgaggtctttatc 225  Q
    ||||||||||||||||  |||||||||| ||||||||||||||    
T  18314971 ttgcttttgctctccgtgagagaccaactttgaggtctttatc 18315013  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 14003853 - 14003817
Alignment:
Q  189 ttgctctccgccagagaccaacattgaggtctttatc 225  Q
    |||||||||||||||||||||||||||  ||||||||    
T  14003853 ttgctctccgccagagaccaacattgacttctttatc 14003817  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 1601225 - 1601177
Alignment:
Q  183 ttgcttttgctctccgccagagaccaacattgaggtctttatcattttc 231  Q
    |||||| |||||||||  ||||||||||||||||||||||||| |||||    
T  1601225 ttgcttctgctctccgtgagagaccaacattgaggtctttatccttttc 1601177  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 53761012 - 53761045
Alignment:
Q  48 cactttttaaactccgtaaggttaatctttctgg 81  Q
    ||||||| ||||||||||||||||||||||||||    
T  53761012 cacttttcaaactccgtaaggttaatctttctgg 53761045  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 79
Target Start/End: Original strand, 13469868 - 13469903
Alignment:
Q  44 cttgcactttttaaactccgtaaggttaatctttct 79  Q
    |||||||||||||||||||| |||||||||||||||    
T  13469868 cttgcactttttaaactccgcaaggttaatctttct 13469903  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 19467780 - 19467832
Alignment:
Q  183 ttgcttttgctctccgccagagaccaacattgaggtctttatcattttccaat 235  Q
    |||||| |||| ||||  ||||||||||||||||||||||||| |||| ||||    
T  19467780 ttgcttctgctatccgtgagagaccaacattgaggtctttatcgttttgcaat 19467832  T

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