View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7905_low_7 (Length: 249)
Name: NF7905_low_7
Description: NF7905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7905_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26235225 - 26234996
Alignment:
| Q |
1 |
cccaaaagcactatacagaccataacaagtaccgatcactgtccacgggcatgcaataaggagaccaaatgataatgcaagcatatacaaagaagtagta |
100 |
Q |
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| T |
26235225 |
cccaaaagcactatacagaccataacaagtaccgatcactgtccacgggcatgcaataaggagaccaaatgataatgcaagcatatacaaagaagtagta |
26235126 |
T |
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| Q |
101 |
aatgttcttttcatgattgatatgtcattggagttttgaaacatgtgtttgatactcatgagactcgtgtcgttgtgattctcttctgaactcaattttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26235125 |
aatgttcttttcatgattgatatgtcattggagttttgaaacatgtgtttgatactcatgagactcgtgtcgttgtgattctcttctgaactcaattttg |
26235026 |
T |
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| Q |
201 |
aggccaaaccaatagttattacagcagaaa |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
26235025 |
aggccaaaccaatagttattacagcagaaa |
26234996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 37672850 - 37672742
Alignment:
| Q |
51 |
atgcaataaggagaccaaatgataatgcaagcatatacaaagaagtagtaaatgttcttttcatgattgatatgtcattggagttttgaaacatgtgttt |
150 |
Q |
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|||||||||| |||| | |||||||||||| ||||||||||||| ||||||||| ||||||| |||| | ||| | || ||||||||||||||||| |
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| T |
37672850 |
atgcaataagaagacaatttgataatgcaagtgtatacaaagaagtgataaatgttcctttcatggttgacacatcaattgaattttgaaacatgtgttt |
37672751 |
T |
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| Q |
151 |
gatactcat |
159 |
Q |
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| T |
37672750 |
gagactcat |
37672742 |
T |
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