View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7905_low_9 (Length: 238)

Name: NF7905_low_9
Description: NF7905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7905_low_9
NF7905_low_9
[»] chr8 (1 HSPs)
chr8 (17-219)||(14261112-14261314)
[»] chr7 (3 HSPs)
chr7 (17-211)||(10575287-10575481)
chr7 (29-133)||(354316-354420)
chr7 (31-133)||(10580701-10580803)
[»] chr3 (7 HSPs)
chr3 (17-219)||(21584677-21584879)
chr3 (17-193)||(24981946-24982122)
chr3 (17-193)||(24919992-24920168)
chr3 (17-196)||(25084938-25085117)
chr3 (17-193)||(24923566-24923742)
chr3 (17-193)||(31825663-31825839)
chr3 (17-196)||(24497362-24497541)
[»] chr4 (2 HSPs)
chr4 (30-208)||(22898466-22898644)
chr4 (30-208)||(22950134-22950312)
[»] chr2 (1 HSPs)
chr2 (21-211)||(41027476-41027666)
[»] chr5 (1 HSPs)
chr5 (28-103)||(26358744-26358819)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 14261314 - 14261112
Alignment:
Q  17 aggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccagcgattcggcgattagcgaga 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||    
T  14261314 aggtaagggattaggaaagggaggtgcaaagagacatcgcaaagtgcttcgtgacaacatccaaggaatcacaaagccagcgattcggcgattagcgaga 14261215  T
Q  117 agaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgtgataagagatgctgttacgtata 216  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14261214 agaggaggtgtgaagagaatcagcgggttgatttatgaagaaactcgcggtgtgttgaagattttcttggagaatgtgataagagatgctgttacgtata 14261115  T
Q  217 ctg 219  Q
    |||    
T  14261114 ctg 14261112  T

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Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 10575287 - 10575481
Alignment:
Q  17 aggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccagcgattcggcgattagcgaga 116  Q
    |||||| ||| |||||||||| |||||||||||||||||||| || || || || |||||||||||||||||||| ||||||||||| ||||| ||||||    
T  10575287 aggtaaaggattaggaaaggggggtgcaaagagacatcgcaaggttctccgtgacaacatccaaggaatcacaaagccagcgattcgtcgattggcgaga 10575386  T
Q  117 agaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgtgataagagatgctgttac 211  Q
    |||||||| ||||| ||||| || || ||||| || || |||||  | |||||||||||||| |||||||||||||| |||||||||||||||||    
T  10575387 agaggaggtgtgaaaagaatcagtggattgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttac 10575481  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 354316 - 354420
Alignment:
Q  29 aggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccagcgattcggcgattagcgagaagaggaggagtg 128  Q
    ||||||||||||||||||| ||||| |||| || ||| ||| |||||| |||||||| ||||| |||||||||||  |||| ||||||||||| || |||    
T  354316 aggaaagggaggtgcaaagtgacatagcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 354415  T
Q  129 aagag 133  Q
    |||||    
T  354416 aagag 354420  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 10580701 - 10580803
Alignment:
Q  31 gaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccagcgattcggcgattagcgagaagaggaggagtgaa 130  Q
    ||||||||||||||||| || || |||| || ||| ||| |||||| |||||||| ||||| |||||||||||  |||| ||||||||||  || |||||    
T  10580701 gaaagggaggtgcaaagtgatattgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagagttggtgtgaa 10580800  T
Q  131 gag 133  Q
    |||    
T  10580801 gag 10580803  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 21584879 - 21584677
Alignment:
Q  17 aggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccagcgattcggcgattagcgaga 116  Q
    ||||||||||||||||||||||||||||||||||||  | ||||| ||||| |||||||| || |||||||| || ||||||||||| ||||| ||||||    
T  21584879 aggtaagggactaggaaagggaggtgcaaagagacacaggaaagttcttcgtgataacattcagggaatcaccaagccagcgattcgtcgattggcgaga 21584780  T
Q  117 agaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgtgataagagatgctgttacgtata 216  Q
    ||||| || || |||||||| || || |||||||| || |||||  | || ||  | ||||| |||||||||||||||||  | ||||| |||||||| |    
T  21584779 agaggtggtgttaagagaatcagtggtttgatttatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtgatgcggttacgtaca 21584680  T
Q  217 ctg 219  Q
    |||    
T  21584679 ctg 21584677  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 24981946 - 24982122
Alignment:
Q  17 aggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccagcgattcggcgattagcgaga 116  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||| ||||| ||||||||||| || ||||| || || || ||||| ||||| || |||    
T  24981946 aggtaagggactaggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaaga 24982045  T
Q  117 agaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgt 193  Q
    ||||| || || |||||||| || || ||||| || ||||||||  | ||||| |||||||| ||||||||||||||    
T  24982046 agaggtggtgttaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgt 24982122  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 24920168 - 24919992
Alignment:
Q  17 aggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccagcgattcggcgattagcgaga 116  Q
    |||||||||| | |||||||||||||||||||| ||| | ||||| ||||| ||||||||||| || ||||| || || || ||||| ||||| || |||    
T  24920168 aggtaagggattgggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgcaattcgtcgattggcaaga 24920069  T
Q  117 agaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgt 193  Q
    ||||| || ||||||||||| ||||| ||||| || ||||||||  | ||||| |||||||| ||||| ||||||||    
T  24920068 agaggtggtgtgaagagaatcagcggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttagagaatgt 24919992  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 25084938 - 25085117
Alignment:
Q  17 aggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccagcgattcggcgattagcgaga 116  Q
    |||||||||| | |||||||||||||||||||| ||| | || || ||||| ||||||||||| || ||||| || || || |||||  |||| ||||||    
T  25084938 aggtaagggattgggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtagattggcgaga 25085037  T
Q  117 agaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgtgat 196  Q
    ||||| || ||||||||||| || || ||||| || ||||||||  | ||||| |||||||| |||||||||||||||||    
T  25085038 agaggtggtgtgaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtgat 25085117  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 24923742 - 24923566
Alignment:
Q  17 aggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccagcgattcggcgattagcgaga 116  Q
    |||||||||||| |||||||||||||||||||| ||| | || || ||||| ||||||||||| || ||||| || || || ||||| ||||| || |||    
T  24923742 aggtaagggactcggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaaga 24923643  T
Q  117 agaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgt 193  Q
    ||||| || || |||||||| || || ||||| || ||||||||  | ||||| |||||||| ||||||||||||||    
T  24923642 agaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgt 24923566  T

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Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 31825839 - 31825663
Alignment:
Q  17 aggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccagcgattcggcgattagcgaga 116  Q
    ||||||||| |||||||||||||||||||| || ||  | ||||| || ||||| |||||||| || ||||| || || || ||||| ||||| ||||||    
T  31825839 aggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagcctgccattcgtcgattggcgaga 31825740  T
Q  117 agaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgt 193  Q
    ||||| || |||||||| || || || ||||| || ||||||||| | ||||| |||||||| ||||||||||||||    
T  31825739 agaggtggtgtgaagaggatcagtggtttgatctatgaagaaactagaggtgtcttgaagatcttcttggagaatgt 31825663  T

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Target: chr3; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 24497541 - 24497362
Alignment:
Q  17 aggtaagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccagcgattcggcgattagcgaga 116  Q
    |||||||||||| |||||||||||||||||||| ||| | || || ||||| || |||||||| || ||||| || || || ||||| ||||| || |||    
T  24497541 aggtaagggactcggaaagggaggtgcaaagaggcataggaaggttcttcgtgacaacatccagggtatcaccaagcctgctattcgtcgattggcaaga 24497442  T
Q  117 agaggaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgtgat 196  Q
    ||||| || || |||||||| || || ||||| || ||||||||  | ||||| |||||||| |||||||| ||||||||    
T  24497441 agaggtggtgttaagagaatcagtggattgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgat 24497362  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 22898466 - 22898644
Alignment:
Q  30 ggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccagcgattcggcgattagcgagaagaggaggagtga 129  Q
    |||||||| || |||||| ||||||| || || ||||| || |||||||| ||||| ||||| ||||||||||| ||  | ||  | |||||||||||||    
T  22898466 ggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtga 22898565  T
Q  130 agagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgtgataagagatgctgt 208  Q
    || | || || || |||||||| || || || || || |||||||||||||| |||||||||||||| |||||||||||    
T  22898566 agcgtatcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgt 22898644  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 22950134 - 22950312
Alignment:
Q  30 ggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccagcgattcggcgattagcgagaagaggaggagtga 129  Q
    |||||||| || |||||| ||||||| || || ||||| || |||||||| ||||| ||||| ||||||||||| ||  | ||  | |||||||||||||    
T  22950134 ggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtga 22950233  T
Q  130 agagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgtgataagagatgctgt 208  Q
    || | || || || |||||||| || || || || || |||||||||||||| |||||||||||||| |||||||||||    
T  22950234 agcgtatcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgt 22950312  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 41027476 - 41027666
Alignment:
Q  21 aagggactaggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccagcgattcggcgattagcgagaagag 120  Q
    |||||| | ||||||||||| |||||  |||| || || || ||||| |||||||| |||||||| || || || |||||||| || || ||  | ||||    
T  41027476 aagggattgggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacattcaaggaattacgaagcctgcgattcgtcgtttggcacgtagag 41027575  T
Q  121 gaggagtgaagagaattagcgggttgatttacgaagaaactcgcggtgtgttgaagatattcttggagaatgtgataagagatgctgttac 211  Q
    ||||||||||| | || ||||| ||||| |||||||| || || || ||||||||||| || ||||||||||| ||  | |||||||||||    
T  41027576 gaggagtgaagcgtataagcggtttgatctacgaagagacacgtggcgtgttgaagatctttttggagaatgttattcgtgatgctgttac 41027666  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 26358819 - 26358744
Alignment:
Q  28 taggaaagggaggtgcaaagagacatcgcaaagtacttcgcgataacatccaaggaatcacaaaaccagcgattcg 103  Q
    |||||||||| ||||||||| | ||||||||||| ||||| |||||||| || ||||| || ||||| ||||||||    
T  26358819 taggaaagggtggtgcaaagcgtcatcgcaaagttcttcgagataacattcagggaattaccaaacccgcgattcg 26358744  T

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