View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7906_high_1 (Length: 1256)
Name: NF7906_high_1
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7906_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 648; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 187 - 905
Target Start/End: Complemental strand, 17725935 - 17725214
Alignment:
| Q |
187 |
aatattttataatcatttagttatgagcaatgaattacaaactcagacacaaacatcggacatggtactggtactaaacaatttaaaataaaatgacatg |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17725935 |
aatattttataatcatttagttatgagcaatgaattacaaactcagacacaaacatcggacatggtactggtactaaacaatttaaaataaaatgacatg |
17725836 |
T |
|
| Q |
287 |
attagacgtaatcatgcataggtgtcgtgtttacatatccggcgccaaaacatgtcatatccgacaccattaataatttaagtttttgaagtgattgaat |
386 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
17725835 |
attagacgtaatcatgcacaggtgtcgtgtttacatatccgacaccaagacatgtcatatccgacaccaataataatttaattttttgaagtgattgaat |
17725736 |
T |
|
| Q |
387 |
caaatcatgtgtattagtattgatcgatatgtgtcagatatcaaacacgccgtcaatttaaagtatgagtaccataaaggaagtaaacaatataaaatta |
486 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17725735 |
caaatcatgtgtagtagtattgaacgatatgtgtcagatatcaaacacgccgtcaatttaaagtatgagtaccataaaggaagtaaacaatataaaatta |
17725636 |
T |
|
| Q |
487 |
atttcaaacttatagtgtgtatagaatagaacattgatttgttattatgccttaatattgaacaggtattggaggctttctatacccattggagaagata |
586 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17725635 |
atgtcaaacttatagtgtgtatagaatagaacattgatttgttattatgccttaatattgaacaggtattggaggctttctatacccattggagaagata |
17725536 |
T |
|
| Q |
587 |
ctgatcacccacttgtgaatccatttggaccaagaagtaagagtcttgaggaaattgatcttgacccaattcttgtggtggttggagaaaatgatttgct |
686 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17725535 |
ctgatcacccacttgtgaatccatttggaccaagaagtaagagtcttgaggaaattgatcttgacccaattcttgtggtggttggagaaaatgatttgct |
17725436 |
T |
|
| Q |
687 |
taaagataggacagatgattatgtaagaaggcttaagaattggggtaaaaatatagagtatgtagaatttgaaggacaacagcatgggttcttcactctt |
786 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17725435 |
taaagataggacagaggattatgcaagaaggcttaagaattggggtaaaaatatagagtatgtagaatttgaaggacaacagcatgggttcttcactatt |
17725336 |
T |
|
| Q |
787 |
gatccaaattcagaaccatcaaaagaattgatgttgttcatcaagcaattcattgaaaaatattgaggg---aatgtttgaatgcttcaaacattttaat |
883 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
17725335 |
gatccaaattcagaaccatcaaaagaattgatgttggtcatcaagcaattcattgagaaatattaagggaataatgtttgaatgcttcaaacattttaat |
17725236 |
T |
|
| Q |
884 |
tgcagtagcttttaaggtatct |
905 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
17725235 |
tgcagtagcttttaaggtatct |
17725214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 3e-88
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 17726138 - 17725961
Alignment:
| Q |
18 |
cggttgagttggcaccggttagggttaggggttatgttttgttggctccgttttttggtggaaccgtgaggaccaagtcagaagctgaaggaccggttga |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17726138 |
cggttgagttggcaccggttcgggttaggggttatgttttgttggcaccgtttattggtggaaccgtgaggaccaagtcagaagctgaaggaccggttga |
17726039 |
T |
|
| Q |
118 |
tgcttttctcaacttggaatatattgacaggttctgtaatttgatttcctatcttcactttgcataccaaatatttta |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17726038 |
tgcttttctcaacttggaatatattgacaggttctgtaatttgatttcctatcttcactttgcataccaaatatttta |
17725961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University