View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7906_high_23 (Length: 238)
Name: NF7906_high_23
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7906_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 48912553 - 48912330
Alignment:
| Q |
1 |
ctttgttttcattagaatttagatttgtcataagcatgtaactggattttgactacatatgtccgtaattgcatatgtataaacgtatcgataaccttta |
100 |
Q |
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| T |
48912553 |
ctttgttttcattagaatttagatttgtcataagcatgtaactggattttgactacatatgtccgtaattgcatatgtataaacgtatcgataaccttta |
48912454 |
T |
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| Q |
101 |
tgtttcttattctgcagttgaactttgttaagttgaaattattgccataaagtttcttcgacgatggatatagtctcccagttacaagaacaagttaatt |
200 |
Q |
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| T |
48912453 |
tgtttcttattctgcagttgaactttgttaatttgaaattatcgccataaagtttcttcgacgatggatatagtctcccagttacaagaacaagttaatt |
48912354 |
T |
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| Q |
201 |
tgatagcacatttagcttctaata |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
48912353 |
tgatagcacatttagcttctaata |
48912330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 202
Target Start/End: Complemental strand, 48923889 - 48923756
Alignment:
| Q |
70 |
tgcatatgtataaacgtatcgataacctttatgtttcttattctgcagttgaac-tttgttaagttgaaattattgccataaagtttcttcgacgatgga |
168 |
Q |
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| T |
48923889 |
tgcatatgtataaacatgtagataacctttatgtttcttattctgcagttgaacattttttaagtcgaaattttctccataaagttactcctgcaattga |
48923790 |
T |
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| Q |
169 |
tatagtctcccagttacaagaacaagttaatttg |
202 |
Q |
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| T |
48923789 |
cattgtcccccagttacaagaacaagttaatttg |
48923756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 13599817 - 13599871
Alignment:
| Q |
164 |
atggatatagtctcccagttacaagaacaagttaatttgatagcacatttagctt |
218 |
Q |
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| T |
13599817 |
atggatataatctctcagctacaagaacaagttaatttgattgcaaacttagctt |
13599871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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