View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7906_high_24 (Length: 232)
Name: NF7906_high_24
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7906_high_24 |
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| [»] scaffold0366 (1 HSPs) |
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| [»] scaffold0459 (1 HSPs) |
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Alignment Details
Target: scaffold0366 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2441 - 2668
Alignment:
| Q |
1 |
atgctacaaaaccagcttaacacggaagcgaaaagaattacaatgcaaagaaacaaacgaatagcctcatgcatgacaaccagggcagactgtagaaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2441 |
atgctacaaaaccagcttaacacggaagcgaaaagaattacaatgcaaagaaacaaacgaatagcctcatgcatgacaaccagggcagactgtagaaaga |
2540 |
T |
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| Q |
101 |
atgatctccacacaaaacatctcaagcaattatgacagacctgaaatctgtccagaataaactgcgacaaatcagaaatgtatcgctactttggacagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2541 |
atgatctccacacaaaacatctcaagcaattatgacagacctgaaatctgtccagaataaactgcgacaaatcagaaatgtatcgctactttggacagca |
2640 |
T |
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| Q |
201 |
gaaaacacagtcaaataaacaccaaact |
228 |
Q |
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|||||||||||||||||||| ||||||| |
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| T |
2641 |
gaaaacacagtcaaataaaccccaaact |
2668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2441 - 2668
Alignment:
| Q |
1 |
atgctacaaaaccagcttaacacggaagcgaaaagaattacaatgcaaagaaacaaacgaatagcctcatgcatgacaaccagggcagactgtagaaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2441 |
atgctacaaaaccagcttaacacggaagcgaaaagaattacaatgcaaagaaacaaacgaatagcctcatgcatgacaaccagggcagactgtagaaaga |
2540 |
T |
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| Q |
101 |
atgatctccacacaaaacatctcaagcaattatgacagacctgaaatctgtccagaataaactgcgacaaatcagaaatgtatcgctactttggacagca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2541 |
atgatctccacacaaaacatctcaagcaattatgacagacctgaaatctgtccagaataaactgcgacatatcagaaatgtatcgctactttggacagca |
2640 |
T |
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| Q |
201 |
gaaaacacagtcaaataaacaccaaact |
228 |
Q |
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|||||||||||||||||||| ||||||| |
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| T |
2641 |
gaaaacacagtcaaataaaccccaaact |
2668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 44372411 - 44372184
Alignment:
| Q |
1 |
atgctacaaaaccagcttaacacggaagcgaaaagaattacaatgcaaagaaacaaacgaatagcctcatgcatgacaaccagggcagactgtagaaaga |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44372411 |
atgctacaaaaccagcttaacacggaagcgaaaagaattacaatgcaaagaaacaaacgaatagcctcatgcatgacaaccagggcagactgtagaaaga |
44372312 |
T |
|
| Q |
101 |
atgatctccacacaaaacatctcaagcaattatgacagacctgaaatctgtccagaataaactgcgacaaatcagaaatgtatcgctactttggacagca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44372311 |
atgatctccacacaaaacatctcaagcaattatgacagacctgaaatctgtccagaataaactgcgacatatcagaaatgtatcgctactttggacagca |
44372212 |
T |
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| Q |
201 |
gaaaacacagtcaaataaacaccaaact |
228 |
Q |
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|||||||||||||||||||| ||||||| |
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| T |
44372211 |
gaaaacacagtcaaataaaccccaaact |
44372184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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