View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7906_high_26 (Length: 220)
Name: NF7906_high_26
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7906_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 5054463 - 5054634
Alignment:
| Q |
18 |
atatcttatgccatatcttactctttttctctttcatttgaacacttcatcatcagacatatattctaaccctcactcatcacatcacatcacaatactt |
117 |
Q |
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| T |
5054463 |
atatcttatgccatatcttactctttttctctttcatttgaacacttcatcatcaaacatatattctaaccctcact-----catcacatcacaatactt |
5054557 |
T |
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| Q |
118 |
gttacatacatacatactagatattctccagttacaaagattgggttttccacattatctgggttcgttgggtcccttatt |
198 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
5054558 |
gt----tacatacatactagatattctccagttacaaagattgggttttccacattgtttgggttcgttgggtcccttatt |
5054634 |
T |
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