View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7906_high_7 (Length: 389)

Name: NF7906_high_7
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7906_high_7
NF7906_high_7
[»] chr1 (4 HSPs)
chr1 (24-378)||(44855510-44855864)
chr1 (24-145)||(21980085-21980198)
chr1 (261-341)||(41914924-41915004)
chr1 (250-341)||(43118062-43118153)
[»] chr3 (1 HSPs)
chr3 (24-347)||(23215557-23215875)
[»] chr2 (2 HSPs)
chr2 (113-347)||(26456974-26457212)
chr2 (111-155)||(44800455-44800499)
[»] chr8 (1 HSPs)
chr8 (24-143)||(43382317-43382428)
[»] chr4 (2 HSPs)
chr4 (250-341)||(29343685-29343776)
chr4 (250-341)||(35829447-35829538)
[»] scaffold0056 (2 HSPs)
scaffold0056 (24-70)||(52860-52906)
scaffold0056 (24-70)||(57973-58019)
[»] chr6 (1 HSPs)
chr6 (24-93)||(11075993-11076062)
[»] chr7 (1 HSPs)
chr7 (261-341)||(46199891-46199971)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 24 - 378
Target Start/End: Complemental strand, 44855864 - 44855510
Alignment:
Q  24 ttattaagtgattgaggttggtggtctaatgtggaatgcttcaacaaactacatgaaattggttttcaaatcactcatccagtgggttaacattttggga 123  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||    
T  44855864 ttattaagtgattgaggttggtggtctactgtggaatgcttcaacaaactacatgaatttggttttcaaattactcatccagtgggttaacatcttggga 44855765  T
Q  124 ttgacttagtatacttggattgtatcctagtacacttgatttcacctatcttatatagtggcataatatgttctaatatgtttttggtttcccttttgaa 223  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44855764 ttgacttagtatacttggattgtattctagtacacttgatttcacctatcttatatagtggcataatatgttctaatatgtttttggtttcccttttgaa 44855665  T
Q  224 tttgcgggtagtcatatgctgcactcaagttgaaacatcataaatatattgtattaaatttaagggaagaaaattttgaaatatgtgagggtccatacta 323  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||     
T  44855664 tttgcggatagtcatatgctgcactcaagttgagacatcataaatatattgtattgaatttaagggaagaaaatttcgaaatatgtgagggtccatactc 44855565  T
Q  324 ttaagttattgtcttttttatattaannnnnnnattatcattcatccacaggttc 378  Q
    ||||||||||||||||||||||||||       ||||||||||||| ||||||||    
T  44855564 ttaagttattgtcttttttatattaatttttttattatcattcatctacaggttc 44855510  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 21980085 - 21980198
Alignment:
Q  24 ttattaagtgattgaggttggtggtctaatgtggaatgcttcaacaaactacatgaaattggttttcaaatcactcatccagtgggttaacattttggga 123  Q
    |||||||||||||||||||||||||||  | | |||||||||| || ||||   ||||||||||||||||| ||||||  ||||     |||||||||||    
T  21980085 ttattaagtgattgaggttggtggtctgctatagaatgcttcagcagacta---gaaattggttttcaaattactcatttagtg-----acattttggga 21980176  T
Q  124 ttgacttagtatacttggattg 145  Q
    |||| |||||| ||||||||||    
T  21980177 ttgatttagtacacttggattg 21980198  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 341
Target Start/End: Complemental strand, 41915004 - 41914924
Alignment:
Q  261 tcataaatatattgtattaaatttaagggaagaaaattttgaaatatgtgagggtccatactattaagttattgtcttttt 341  Q
    ||||||| |||||| ||| | ||| ||||||||||| ||  ||| ||||||| ||||||||| ||| ||||||||||||||    
T  41915004 tcataaaaatattgcattgagttttagggaagaaaaattctaaaaatgtgagtgtccatactcttacgttattgtcttttt 41914924  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 341
Target Start/End: Original strand, 43118062 - 43118153
Alignment:
Q  250 aagttgaaacatcataaatatattgtattaaatttaagggaagaaaattttgaaatatgtgagggtccatactattaagttattgtcttttt 341  Q
    ||||||| || ||||||| |||||| ||| | ||| ||||||||||| ||  ||| ||||||| |||||||||  || ||||||||||||||    
T  43118062 aagttgagacttcataaaaatattgcattgagttttagggaagaaaaattcaaaaaatgtgagtgtccatactcctacgttattgtcttttt 43118153  T

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Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 24 - 347
Target Start/End: Complemental strand, 23215875 - 23215557
Alignment:
Q  24 ttattaagtgattgaggttggtggtctaatgtggaatgcttcaacaaactacatgaaattggttttcaaatcactcatccagtgggttaacattttggga 123  Q
    ||||||||||| ||| ||||| |||||  | ||||||||||||  | ||| || ||||||||||||||||| ||||||  ||||     |||||||||||    
T  23215875 ttattaagtgactgaagttggcggtctgctatggaatgcttcagaagactccaggaaattggttttcaaattactcatttagtg-----acattttggga 23215781  T
Q  124 ttgacttagtatacttggattgtatcctagtacacttgatttcacctatcttatatagtggcataatatgttctaa-tatgtttttggtttcccttttga 222  Q
    ||||||||||| ||||| |||| ||| ||| |||||||||||||    |||||||||||||| |||| || ||||| | |||||||||||||||||||||    
T  23215780 ttgacttagtacacttgcattgcatcttaggacacttgatttcattagtcttatatagtggcgtaatctgatctaaatgtgtttttggtttcccttttga 23215681  T
Q  223 atttgcgggtagtcatatgctgcactcaagttgaaacatcataaatatattgtattaaatttaagggaagaaaattttgaaatatgtgagggtccatact 322  Q
    |||||  |||||||||||| |||||| ||||||| || ||||||||||||||  ||  ||| |||||||||||| ||  |||  ||| || || |||| |    
T  23215680 atttgttggtagtcatatgatgcacttaagttgagacttcataaatatattg-ctttgattgaagggaagaaaaattcaaaagttgttagtgttcatatt 23215582  T
Q  323 attaagttattgtcttttttatatt 347  Q
     | |||||||||||||||| |||||    
T  23215581 ctcaagttattgtctttttaatatt 23215557  T

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Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 113 - 347
Target Start/End: Original strand, 26456974 - 26457212
Alignment:
Q  113 acattttgggattgacttagtat----acttggattgtatcctagtacacttgatttcacctatcttatatagtggcataatatgttctaa-tatgtttt 207  Q
    ||||||||||||||||||||||     ||| | |||| ||| ||| |||||||||||||    |||||||||||||  |||| || ||||| | ||||||    
T  26456974 acattttgggattgacttagtactaacactagcattgcatcttaggacacttgatttcattagtcttatatagtggtgtaatctgatctaaatgtgtttt 26457073  T
Q  208 tggtttcccttttgaatttgcgggtagtcatatgctgcactcaagttgaaacatcataaatatattgtattaaatttaagggaagaaaattttgaaatat 307  Q
    ||||||||||||||||||||  |||||||||||| |||||| ||||||| || |||||||||||||| ||| |||| || ||||||||| ||  |||  |    
T  26457074 tggtttcccttttgaatttgttggtagtcatatgatgcacttaagttgagacttcataaatatattgcattgaattgaa-ggaagaaaaattcaaaagct 26457172  T
Q  308 gtgagggtccatactattaagttattgtcttttttatatt 347  Q
    ||||| || ||||||   ||||||||||||||||||||||    
T  26457173 gtgagtgttcatactcccaagttattgtcttttttatatt 26457212  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 44800455 - 44800499
Alignment:
Q  111 taacattttgggattgacttagtatacttggattgtatcctagta 155  Q
    ||||||||||| |||||||||||| ||||||||| |||| |||||    
T  44800455 taacattttggaattgacttagtacacttggattttatcttagta 44800499  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 43382317 - 43382428
Alignment:
Q  24 ttattaagtgattgaggttggtggtctaatgtggaatgcttcaacaaactacatgaaattggttttcaaatcactcatccagtgggttaacattttggga 123  Q
    |||||||||||||||||||||||||||  | |||||||||||| || ||||   ||||||||||||||||| ||||||  ||||     |||||||||||    
T  43382317 ttattaagtgattgaggttggtggtctgctatggaatgcttcagcatacta---gaaattggttttcaaattactcatttagtg-----acattttggga 43382408  T
Q  124 ttgacttagtatacttggat 143  Q
    ||||||||||| ||||||||    
T  43382409 ttgacttagtacacttggat 43382428  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 341
Target Start/End: Complemental strand, 29343776 - 29343685
Alignment:
Q  250 aagttgaaacatcataaatatattgtattaaatttaagggaagaaaattttgaaatatgtgagggtccatactattaagttattgtcttttt 341  Q
    ||||||| || ||||||| |||||| ||| | ||| ||||||||||| ||  ||| ||||||| ||||||||| ||| ||||||||||||||    
T  29343776 aagttgagacttcataaaaatattgcattgagttttagggaagaaaaattctaaaaatgtgagtgtccatactcttacgttattgtcttttt 29343685  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 341
Target Start/End: Complemental strand, 35829538 - 35829447
Alignment:
Q  250 aagttgaaacatcataaatatattgtattaaatttaagggaagaaaattttgaaatatgtgagggtccatactattaagttattgtcttttt 341  Q
    ||||||| || ||||||| |||||| ||| | ||| ||||||||||| ||  ||| ||||||| |||||||||  || ||||||||||||||    
T  35829538 aagttgagacttcataaaaatattgcattgagttttagggaagaaaaattctaaaaatgtgagtgtccatactcctacgttattgtcttttt 35829447  T

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Target: scaffold0056 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 52860 - 52906
Alignment:
Q  24 ttattaagtgattgaggttggtggtctaatgtggaatgcttcaacaa 70  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||||    
T  52860 ttattaagtgattgaggttggtggcctactatggaatgcttcaacaa 52906  T

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Target: scaffold0056; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 57973 - 58019
Alignment:
Q  24 ttattaagtgattgaggttggtggtctaatgtggaatgcttcaacaa 70  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||||    
T  57973 ttattaagtgattgaggttggtggcctactatggaatgcttcaacaa 58019  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 11075993 - 11076062
Alignment:
Q  24 ttattaagtgattgaggttggtggtctaatgtggaatgcttcaacaaactacatgaaattggttttcaaa 93  Q
    ||||||||||||||| ||||| |||||  | |||||||||||| || ||| || ||||||||||||||||    
T  11075993 ttattaagtgattgaagttggcggtctgctatggaatgcttcagcagactccaggaaattggttttcaaa 11076062  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 341
Target Start/End: Original strand, 46199891 - 46199971
Alignment:
Q  261 tcataaatatattgtattaaatttaagggaagaaaattttgaaatatgtgagggtccatactattaagttattgtcttttt 341  Q
    ||||||| |||||| ||| | ||| ||||||||||| ||  ||| ||||||| |||||||||  || ||||||||||||||    
T  46199891 tcataaaaatattgcattgagttttagggaagaaaaattctaaaaatgtgagtgtccatactcctacgttattgtcttttt 46199971  T

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