View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7906_high_8 (Length: 373)
Name: NF7906_high_8
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7906_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 10765794 - 10765475
Alignment:
| Q |
18 |
gaatcatcggccacatttgactgcgattcttcgcaatatcaaagatggtgacgtaatttaattgcaacccttatcgcatactctatttaaaaccctggat |
117 |
Q |
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| T |
10765794 |
gaatcatcggccacatttgactgcgattcttcgcaatatcaaagatggtgacgtaatt-----gcaacccttatcgcagactctatttaaaaccctggat |
10765700 |
T |
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| Q |
118 |
gggacctatgctcagcagaggtgggtggaagccggtgagtatgaaggatttattttcctatataaaagatagatagagccgctgccgcatagaaagtgtg |
217 |
Q |
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| T |
10765699 |
gggacctatgctcagcagaggtgggtggaagccggtgagtatgaaggatttattttcctatataaaagatagatagagccgctgccgcatagaaagtgtg |
10765600 |
T |
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| Q |
218 |
gataaattaatcatgtattatgaatagtatgaatgctcaccttgattctttctttgcaaaagttgaaacttgtcagtaaaattagggtatctaagcttat |
317 |
Q |
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| T |
10765599 |
gataaattaatcatgtattatgaatagtatgaatgctcaccttgattctttctttgcaaaagttgaaacttgtcagtaaaattagggtatctaagcttat |
10765500 |
T |
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| Q |
318 |
gccaagtagcatctataacaccaaa |
342 |
Q |
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| T |
10765499 |
gccaagtagcatctacaacaccaaa |
10765475 |
T |
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Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 254 - 342
Target Start/End: Complemental strand, 38325840 - 38325752
Alignment:
| Q |
254 |
tcaccttgattctttctttgcaaaagttgaaacttgtcagtaaaattagggtatctaagcttatgccaagtagcatctataacaccaaa |
342 |
Q |
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| T |
38325840 |
tcaccttgattcttcctttgcaaaagttgaaacttgtccgcgaaattagggtatctaagcttgtgccaagtagcatctactacaccaaa |
38325752 |
T |
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