View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7906_low_11 (Length: 369)
Name: NF7906_low_11
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7906_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 41418111 - 41417755
Alignment:
| Q |
1 |
acaacttagttggtacctgttagaacattgatatgcaagagtctaaagttccaacccgagattctctgcacttaagtgtgtgagtccctaacacctaggt |
100 |
Q |
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| T |
41418111 |
acaacttagttggtacctgttagaacattgatatgcaagagtctaaagttccaacccgagattctctgcacttaagtgtgtgagtccctaacacctaggt |
41418012 |
T |
|
| Q |
101 |
acttcnnnnnnncagaaaaatatttgggttatgaccgtgttcccacatttatattctaacagcctcgtattagtacagaaatttggtggatcccataatt |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41418011 |
acttcaaaaaaacagaaaaatatttgggttatgaccgtgttcccgcatttatattctaacagcctcgtattagtacagaaatttggtggatcccataatt |
41417912 |
T |
|
| Q |
201 |
aaaaaccaataaatttttatagaattcttctctttttgtctctctgtctccatatggaaggatttatttatttatttcgagagtatcatgtttgtaaact |
300 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41417911 |
aaaaaccaataaatttt-atagaactcttctctttttgtctctctgtctccatatggaaggatttttttatttatttcgagagtatcatgtttgtaaact |
41417813 |
T |
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| Q |
301 |
gcacatttcaatgtggaattttcattttaaataagttttgttgagggctctctgctac |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41417812 |
gcacatttcaatgtggaattttcattttaaataagttttgttgagggctctgtgctac |
41417755 |
T |
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