View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7906_low_13 (Length: 348)

Name: NF7906_low_13
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7906_low_13
NF7906_low_13
[»] chr4 (3 HSPs)
chr4 (102-326)||(11546153-11546377)
chr4 (98-327)||(11448401-11448635)
chr4 (243-294)||(37061924-37061975)
[»] chr1 (2 HSPs)
chr1 (243-298)||(24855208-24855263)
chr1 (244-293)||(34738763-34738812)
[»] chr6 (1 HSPs)
chr6 (244-293)||(26472731-26472780)
[»] chr7 (2 HSPs)
chr7 (244-295)||(28731158-28731209)
chr7 (243-291)||(5793779-5793827)
[»] chr2 (1 HSPs)
chr2 (243-294)||(8064302-8064353)
[»] chr5 (1 HSPs)
chr5 (249-294)||(9035443-9035488)
[»] chr3 (1 HSPs)
chr3 (243-292)||(34816719-34816768)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 102 - 326
Target Start/End: Original strand, 11546153 - 11546377
Alignment:
Q  102 tagttattataataacaattggccatgtgcttattttgcttacaaccagctcatgaagaaataatatagtagtgtacatgtgtttaatttgctgtag-tg 200  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  11546153 tagttattataataacaattgaccgtgtgcttattttgcttacaaccagctcatgaagaaataatatagtagtgtacatgtgtttaatttgttgtagatg 11546252  T
Q  201 gtcaagctcgtctattttgaaagagacaccacattnnnnnnngttgtatgtgaaaaattgttttgaatcgtcaacctaccactattaaactcttaaaatt 300  Q
    ||||||| ||||||||||||||||||| |||||||       |||||||||| ||||||||||||||||||||| | |||||||||||| ||||| ||      
T  11546253 gtcaagcccgtctattttgaaagagacgccacatt-aaaaaagttgtatgtgcaaaattgttttgaatcgtcaatccaccactattaaattcttataaaa 11546351  T
Q  301 attgtaaatataagatggaatcatat 326  Q
     |||||||||| ||||||||||||||    
T  11546352 tttgtaaatatgagatggaatcatat 11546377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 98 - 327
Target Start/End: Complemental strand, 11448635 - 11448401
Alignment:
Q  98 acgttagttattataataacaattggccatgtgcttattttgcttacaaccagctcatgaagaaataatatagtagtgtacatgtgtttaatttgctgta 197  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11448635 acgttagttattataataacaattgaccgtgtgcttattttgcttacaaccagctcatgaagaaataatatagtagtgtacatgtgtttaatttgctgta 11448536  T
Q  198 g-tggtcaagct----cgtctattttgaaagagacaccacattnnnnnnngttgtatgtgaaaaattgttttgaatcgtcaacctaccactattaaactc 292  Q
    | |||||||||     |||||||||||||| ||||||||||||       ||| |||||| ||||||||||||||||||||||| |||||| |||||||     
T  11448535 ggtggtcaagcaagcccgtctattttgaaatagacaccacattaaaaaaagttatatgtgcaaaattgttttgaatcgtcaacccaccactgttaaactt 11448436  T
Q  293 ttaaaattattgtaaatataagatggaatcatata 327  Q
    ||||||   || ||||||| |||||||||||||||    
T  11448435 ttaaaaaatttataaatatgagatggaatcatata 11448401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 37061975 - 37061924
Alignment:
Q  243 gttgtatgtgaaaaattgttttgaatcgtcaacctaccactattaaactctt 294  Q
    ||||| |||| |||| |||||||||||||||||| | |||||||||||||||    
T  37061975 gttgtgtgtgcaaaactgttttgaatcgtcaacccatcactattaaactctt 37061924  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 24855208 - 24855263
Alignment:
Q  243 gttgtatgtgaaaaattgttttgaatcgtcaacctaccactattaaactcttaaaa 298  Q
    |||||||||| |||||||||||| | ||||||||||||||||||||||||||||||    
T  24855208 gttgtatgtgcaaaattgttttggaccgtcaacctaccactattaaactcttaaaa 24855263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 34738763 - 34738812
Alignment:
Q  244 ttgtatgtgaaaaattgttttgaatcgtcaacctaccactattaaactct 293  Q
    ||||||||| |||||||||||| | |||||||| ||||| ||||||||||    
T  34738763 ttgtatgtgcaaaattgttttggaccgtcaacccaccaccattaaactct 34738812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 26472731 - 26472780
Alignment:
Q  244 ttgtatgtgaaaaattgttttgaatcgtcaacctaccactattaaactct 293  Q
    ||||| ||| ||||||||||||||  ||||||||||||||||||||||||    
T  26472731 ttgtacgtgtaaaattgttttgaactgtcaacctaccactattaaactct 26472780  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 28731158 - 28731209
Alignment:
Q  244 ttgtatgtgaaaaattgttttgaatcgtcaacctaccactattaaactctta 295  Q
    ||||||||| |||||||||||| | |||||||| |||| |||||||||||||    
T  28731158 ttgtatgtgcaaaattgttttggaccgtcaacccaccattattaaactctta 28731209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 5793827 - 5793779
Alignment:
Q  243 gttgtatgtgaaaaattgttttgaatcgtcaacctaccactattaaact 291  Q
    ||||| |||| |||||||||||||| |||||||| ||||| ||||||||    
T  5793827 gttgtgtgtgcaaaattgttttgaaccgtcaacccaccaccattaaact 5793779  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 8064302 - 8064353
Alignment:
Q  243 gttgtatgtgaaaaattgttttgaatcgtcaacctaccactattaaactctt 294  Q
    |||||||||| |||||||||| | | |||||||||||||| |||||||||||    
T  8064302 gttgtatgtgcaaaattgtttcggaccgtcaacctaccaccattaaactctt 8064353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 9035443 - 9035488
Alignment:
Q  249 tgtgaaaaattgttttgaatcgtcaacctaccactattaaactctt 294  Q
    |||| |||||||||||| |||||||| | |||||||||||||||||    
T  9035443 tgtgcaaaattgttttggatcgtcaatccaccactattaaactctt 9035488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 34816719 - 34816768
Alignment:
Q  243 gttgtatgtgaaaaattgttttgaatcgtcaacctaccactattaaactc 292  Q
    |||||||||| |||| ||||||| | |||||||| |||||||||||||||    
T  34816719 gttgtatgtgcaaaactgttttggaccgtcaacccaccactattaaactc 34816768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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