View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7906_low_14 (Length: 339)
Name: NF7906_low_14
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7906_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 20154333 - 20154645
Alignment:
| Q |
18 |
caacaaaattaggccttcaacttcacctccttgaaatcccatttccatgtcaacaagttcaacttccattagactgtgaaaatctcgacgctttaccatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20154333 |
caacaaaattaggccttcaacttcacctccttgaaatcccatttccatgtcaacaagttcaacttccattagactgcgaaaatctcgacgctttaccatc |
20154432 |
T |
|
| Q |
118 |
aagaaacctactcagaaacttctacaatgcacttcacatgcttcaagagcctttagagaattacctcaaaaaccatacttttcccccaagttgcattata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
20154433 |
aagaaacctactcagaaacttctacaatgcacttcacatgcttcaagagcctttagagaattacctcaaaaaccatacttttccaccaagttgcattata |
20154532 |
T |
|
| Q |
218 |
tcagataaatgcatctcttggacaatcttaacagcacaaaagttcaatattccaagacttgttttccatggcatgtcttgtttctcattactaagctcct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20154533 |
tcagataaatgcatctcttggacaatcttaacagcacaaaagttcaatattccaagacttgttttccatggcatgtcttgtttctcattactaagctcct |
20154632 |
T |
|
| Q |
318 |
ataacaccaaact |
330 |
Q |
| |
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|||||| |||||| |
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| T |
20154633 |
ataacatcaaact |
20154645 |
T |
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