View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7906_low_17 (Length: 317)
Name: NF7906_low_17
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7906_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 41 - 314
Target Start/End: Original strand, 8254606 - 8254893
Alignment:
| Q |
41 |
caagatatataagaatgagtctagtcataataaactttacaataaaatgattcaaaatcaat--------------aattcttcccattttgctctttag |
126 |
Q |
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| T |
8254606 |
caagatatataagaatgagtctaatcataataaactttacaataaaatgattcaaaatcaattttcaacacgctgtaattcttccaattttgctctttag |
8254705 |
T |
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| Q |
127 |
attatccaaaagagaaccacaatagtgtttcttttcgaaaaggaagaatctgacatcctttttcataagaatcaggggccaccacccaaaatggtataaa |
226 |
Q |
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| T |
8254706 |
attatccaaaagagaaccacaatagtgtttcttttcgtaaaggaagaatctgacatcctttttcataagaatcaggggccaccacccaaaatggtataaa |
8254805 |
T |
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| Q |
227 |
atataaaagttaaaagaagaataatgccattcagtccttctttgtttggataaacattcttggctcttgctcccatattcttcgacat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
8254806 |
atataaaagttaaaagaagaataatgccattcagtccttctttgtttggataaacattcttggctcttgctcccctattaatcgacat |
8254893 |
T |
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