View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7906_low_19 (Length: 297)

Name: NF7906_low_19
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7906_low_19
NF7906_low_19
[»] chr8 (30 HSPs)
chr8 (17-297)||(33511190-33511470)
chr8 (104-290)||(36143286-36143472)
chr8 (140-281)||(29700233-29700374)
chr8 (112-284)||(2518573-2518748)
chr8 (132-290)||(10824339-10824497)
chr8 (95-261)||(45512699-45512870)
chr8 (151-284)||(44373740-44373877)
chr8 (129-252)||(18474173-18474296)
chr8 (112-180)||(29520585-29520653)
chr8 (98-249)||(13171865-13172020)
chr8 (112-259)||(45419164-45419313)
chr8 (109-239)||(16252857-16252989)
chr8 (119-283)||(32043522-32043690)
chr8 (104-163)||(43732484-43732543)
chr8 (95-161)||(25288810-25288876)
chr8 (95-161)||(25300145-25300211)
chr8 (112-283)||(41971960-41972131)
chr8 (151-281)||(9695595-9695729)
chr8 (129-283)||(44681221-44681379)
chr8 (112-180)||(15215560-15215628)
chr8 (104-180)||(30456501-30456576)
chr8 (112-167)||(28300414-28300469)
chr8 (112-167)||(37077690-37077745)
chr8 (218-283)||(5908683-5908746)
chr8 (175-281)||(12611527-12611633)
chr8 (114-188)||(25439394-25439468)
chr8 (131-180)||(16705706-16705755)
chr8 (112-180)||(10080194-10080262)
chr8 (216-268)||(17491818-17491870)
chr8 (104-180)||(36395239-36395315)
[»] chr6 (13 HSPs)
chr6 (98-254)||(33083969-33084129)
chr6 (86-233)||(31818437-31818582)
chr6 (131-234)||(8364520-8364623)
chr6 (98-180)||(33998293-33998375)
chr6 (98-180)||(12134190-12134272)
chr6 (135-278)||(2079288-2079435)
chr6 (112-180)||(5129126-5129194)
chr6 (112-260)||(608084-608234)
chr6 (114-234)||(6641640-6641764)
chr6 (117-167)||(7513285-7513335)
chr6 (110-283)||(546922-547094)
chr6 (137-189)||(4796889-4796941)
chr6 (112-180)||(9594001-9594069)
[»] chr3 (29 HSPs)
chr3 (95-283)||(42510198-42510385)
chr3 (98-260)||(54128289-54128455)
chr3 (119-284)||(36820142-36820309)
chr3 (95-268)||(2340911-2341088)
chr3 (132-180)||(22902751-22902799)
chr3 (130-283)||(39600863-39601020)
chr3 (153-248)||(54365194-54365290)
chr3 (175-283)||(34719254-34719362)
chr3 (83-260)||(52138696-52138877)
chr3 (104-167)||(45728063-45728126)
chr3 (98-180)||(345000-345082)
chr3 (86-180)||(23534858-23534952)
chr3 (184-290)||(41842686-41842792)
chr3 (129-234)||(44134061-44134164)
chr3 (176-254)||(50960844-50960922)
chr3 (175-252)||(3987039-3987116)
chr3 (175-283)||(21200542-21200648)
chr3 (102-268)||(46140349-46140517)
chr3 (95-283)||(50249289-50249487)
chr3 (104-253)||(25191296-25191447)
chr3 (88-180)||(50621649-50621741)
chr3 (129-175)||(48777509-48777555)
chr3 (223-268)||(30572995-30573040)
chr3 (152-192)||(2198836-2198876)
chr3 (243-283)||(14783621-14783661)
chr3 (112-180)||(38054626-38054694)
chr3 (104-180)||(46568033-46568109)
chr3 (104-180)||(51447998-51448074)
chr3 (130-230)||(55244245-55244345)
[»] chr7 (34 HSPs)
chr7 (104-268)||(30200160-30200324)
chr7 (109-290)||(48736074-48736259)
chr7 (104-283)||(36514389-36514570)
chr7 (86-283)||(39811856-39812057)
chr7 (104-281)||(5335839-5336018)
chr7 (112-283)||(19262616-19262788)
chr7 (95-261)||(25579281-25579445)
chr7 (112-283)||(47848599-47848774)
chr7 (175-281)||(42187462-42187568)
chr7 (151-283)||(27893733-27893864)
chr7 (104-253)||(37617861-37618015)
chr7 (133-180)||(25826759-25826806)
chr7 (221-283)||(18605328-18605390)
chr7 (221-283)||(18637600-18637662)
chr7 (221-283)||(18651034-18651096)
chr7 (95-185)||(28542168-28542257)
chr7 (86-253)||(33072853-33073022)
chr7 (224-282)||(43791624-43791682)
chr7 (131-177)||(47796430-47796476)
chr7 (201-282)||(35713713-35713794)
chr7 (175-260)||(36136756-36136841)
chr7 (104-180)||(1740714-1740790)
chr7 (175-251)||(27021906-27021982)
chr7 (129-282)||(28628116-28628273)
chr7 (129-266)||(36101964-36102105)
chr7 (112-253)||(43281601-43281744)
chr7 (175-283)||(45558354-45558462)
chr7 (129-180)||(35713621-35713672)
chr7 (109-167)||(23404340-23404398)
chr7 (104-145)||(14593678-14593719)
chr7 (104-145)||(16013201-16013242)
chr7 (222-283)||(48202884-48202945)
chr7 (104-180)||(35906490-35906566)
chr7 (112-180)||(45836769-45836837)
[»] chr4 (41 HSPs)
chr4 (98-283)||(17900391-17900580)
chr4 (112-291)||(54470132-54470315)
chr4 (96-282)||(50662298-50662487)
chr4 (129-283)||(10208980-10209134)
chr4 (175-281)||(35555831-35555937)
chr4 (86-280)||(29398718-29398915)
chr4 (98-283)||(33709830-33710024)
chr4 (129-196)||(20998954-20999025)
chr4 (129-252)||(51252674-51252799)
chr4 (175-284)||(31339529-31339637)
chr4 (175-268)||(41192828-41192921)
chr4 (112-176)||(2588906-2588970)
chr4 (175-283)||(28497482-28497589)
chr4 (104-253)||(33191060-33191213)
chr4 (112-179)||(20105761-20105828)
chr4 (137-268)||(3254082-3254216)
chr4 (104-166)||(44860771-44860833)
chr4 (222-284)||(54934939-54935001)
chr4 (222-267)||(13805463-13805508)
chr4 (95-180)||(27991704-27991789)
chr4 (104-281)||(30807511-30807688)
chr4 (112-177)||(40933188-40933253)
chr4 (96-234)||(49987337-49987479)
chr4 (104-253)||(31960026-31960179)
chr4 (112-196)||(45423544-45423628)
chr4 (129-180)||(45185306-45185357)
chr4 (200-283)||(47611744-47611827)
chr4 (98-285)||(31403198-31403391)
chr4 (112-251)||(39100749-39100890)
chr4 (98-155)||(18499784-18499841)
chr4 (104-145)||(33227126-33227167)
chr4 (104-180)||(12494667-12494743)
chr4 (104-180)||(23906590-23906666)
chr4 (218-254)||(25257792-25257828)
chr4 (104-188)||(43070045-43070129)
chr4 (104-180)||(43433835-43433911)
chr4 (104-253)||(48622755-48622906)
chr4 (96-233)||(50680648-50680789)
chr4 (214-254)||(53518531-53518571)
chr4 (214-250)||(56225097-56225133)
chr4 (104-180)||(56375207-56375283)
[»] chr1 (41 HSPs)
chr1 (98-283)||(39422225-39422412)
chr1 (95-261)||(1661334-1661508)
chr1 (186-284)||(52837528-52837626)
chr1 (175-283)||(2544591-2544699)
chr1 (117-244)||(35672618-35672745)
chr1 (132-283)||(35828732-35828887)
chr1 (175-268)||(43423711-43423804)
chr1 (98-283)||(14226011-14226198)
chr1 (114-188)||(4590805-4590879)
chr1 (98-253)||(9509229-9509388)
chr1 (112-205)||(12135655-12135747)
chr1 (135-253)||(39140468-39140590)
chr1 (182-283)||(48431588-48431689)
chr1 (184-280)||(32404711-32404807)
chr1 (104-180)||(34792638-34792714)
chr1 (109-176)||(16822312-16822379)
chr1 (104-235)||(6641049-6641181)
chr1 (241-283)||(43375769-43375811)
chr1 (98-180)||(52442793-52442875)
chr1 (99-180)||(4379917-4379998)
chr1 (98-232)||(9599627-9599765)
chr1 (104-253)||(1210662-1210815)
chr1 (175-283)||(3819038-3819146)
chr1 (175-283)||(40416363-40416471)
chr1 (104-180)||(40419556-40419632)
chr1 (112-180)||(40920826-40920894)
chr1 (98-145)||(26016348-26016395)
chr1 (175-254)||(26016429-26016508)
chr1 (112-252)||(32231167-32231311)
chr1 (175-290)||(43240554-43240669)
chr1 (104-251)||(8671837-8671986)
chr1 (112-290)||(15085859-15086041)
chr1 (118-167)||(16273122-16273171)
chr1 (86-167)||(19936421-19936502)
chr1 (112-180)||(696194-696262)
chr1 (112-180)||(4001744-4001812)
chr1 (104-180)||(9592651-9592727)
chr1 (218-290)||(29807901-29807973)
chr1 (104-180)||(30202419-30202495)
chr1 (177-277)||(39525775-39525875)
chr1 (104-253)||(51440977-51441130)
[»] chr5 (36 HSPs)
chr5 (100-234)||(11002654-11002790)
chr5 (129-283)||(9235011-9235164)
chr5 (98-281)||(10082923-10083109)
chr5 (115-280)||(37124497-37124664)
chr5 (115-281)||(30588381-30588547)
chr5 (129-180)||(683981-684032)
chr5 (129-265)||(6888935-6889075)
chr5 (142-254)||(41833793-41833907)
chr5 (157-264)||(33667188-33667297)
chr5 (129-234)||(14667699-14667814)
chr5 (175-290)||(79505-79620)
chr5 (135-283)||(7359442-7359593)
chr5 (147-283)||(14749267-14749407)
chr5 (112-179)||(21093701-21093768)
chr5 (150-265)||(28676562-28676677)
chr5 (200-283)||(42199303-42199386)
chr5 (98-251)||(1275176-1275332)
chr5 (98-167)||(16134481-16134550)
chr5 (190-283)||(43475247-43475340)
chr5 (104-180)||(2075763-2075839)
chr5 (111-167)||(6368227-6368283)
chr5 (93-145)||(27998329-27998381)
chr5 (112-233)||(32516483-32516606)
chr5 (177-236)||(27887-27946)
chr5 (112-167)||(21952276-21952331)
chr5 (133-253)||(31636132-31636254)
chr5 (112-178)||(7678405-7678471)
chr5 (179-284)||(18351088-18351194)
chr5 (95-180)||(5305524-5305609)
chr5 (95-180)||(28186957-28187042)
chr5 (200-261)||(29938132-29938193)
chr5 (130-167)||(38341723-38341760)
chr5 (95-180)||(41110030-41110115)
chr5 (104-180)||(1287878-1287954)
chr5 (104-160)||(24178427-24178483)
chr5 (115-196)||(34194767-34194850)
[»] scaffold0018 (1 HSPs)
scaffold0018 (95-280)||(44053-44245)
[»] chr2 (31 HSPs)
chr2 (117-254)||(9578914-9579053)
chr2 (98-281)||(7825269-7825458)
chr2 (104-186)||(9647888-9647970)
chr2 (139-290)||(11017268-11017421)
chr2 (95-166)||(45077656-45077727)
chr2 (113-252)||(9556582-9556724)
chr2 (175-283)||(11412713-11412819)
chr2 (112-234)||(12734626-12734750)
chr2 (98-284)||(23714442-23714629)
chr2 (98-284)||(24102114-24102301)
chr2 (112-260)||(40759024-40759177)
chr2 (112-260)||(41763247-41763398)
chr2 (112-249)||(41330062-41330195)
chr2 (175-283)||(43752129-43752237)
chr2 (121-233)||(44411650-44411762)
chr2 (133-180)||(37393455-37393502)
chr2 (187-283)||(3305962-3306059)
chr2 (178-283)||(12141539-12141644)
chr2 (222-283)||(42149828-42149889)
chr2 (221-290)||(42543273-42543342)
chr2 (112-167)||(16097292-16097347)
chr2 (112-283)||(38434876-38435052)
chr2 (99-145)||(4598888-4598934)
chr2 (200-258)||(41779515-41779573)
chr2 (222-283)||(12026187-12026248)
chr2 (222-283)||(37481799-37481860)
chr2 (104-253)||(3243865-3244016)
chr2 (129-165)||(21834495-21834531)
chr2 (104-180)||(36183368-36183444)
chr2 (104-180)||(42092436-42092512)
chr2 (175-283)||(43832091-43832198)
[»] scaffold0003 (1 HSPs)
scaffold0003 (222-283)||(346955-347016)


Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 33511190 - 33511470
Alignment:
Q  17 atgatggggtggtttgcttttgtatttgccttatggtttatttgtgattaatttttgtccttgcttaagatgaggatgaaataagcatagcagaaatgag 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33511190 atgatggggtggtttgcttttgtatttgccttatggtttctttgtgattaatttttgtccttgcttaagatgaggatgaaataagcatagcagaaatgag 33511289  T
Q  117 gatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaa 216  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33511290 gatgttgcgcttgatgtgtggtaagactatatgagatatgattagaaatgaaaatattagagagttggggtaacacctatggtagaaaaaatgatgaaaa 33511389  T
Q  217 atagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatcaattggagatagtca 297  Q
    |||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  33511390 atagacttaggtggtttgagtatacagagagaagacctatagattctgtagttaagagagtagatcaattggagatagtca 33511470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 104 - 290
Target Start/End: Original strand, 36143286 - 36143472
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaa 203  Q
    ||||||| |||||||||||| | | |  |||||||||||||| |||||||||||||||||| ||||| |||||||||| | |||| ||||||| ||||||    
T  36143286 tagcagagatgaggatgttgtgttggtcgtgtggtaagactagatgagataggattagaaaggaaaagattagagagtcgaggtagcacctatagcagaa 36143385  T
Q  204 aaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatcaattggag 290  Q
     | ||| || ||||||||||||||||||||| | || |||||| ||||||| |||||| ||||||   ||||||||||||| |||||    
T  36143386 tagatggtggaaaatagacttaggtggtttgggcatttagagaaaagacctatagattctgtagtatggagagtagatcaaatggag 36143472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 140 - 281
Target Start/End: Original strand, 29700233 - 29700374
Alignment:
Q  140 agactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtat 239  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||| | |||||| |||  | ||| | | ||||||||||||| | ||    
T  29700233 agactagatgagataggattagaaatgaaaatgttagagagttggggtagcacctatagtagaaaagatggaggaaagttggcttaggtggtttgggcat 29700332  T
Q  240 atagagagaagacctttagattatgtagttaagagagtagat 281  Q
    ||||||| |||||| || |||| |||||| | ||||||||||    
T  29700333 atagagaaaagaccattggattctgtagtaaggagagtagat 29700374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 284
Target Start/End: Complemental strand, 2518748 - 2518573
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag----ttggggtaacacctatggcagaaaaaa 207  Q
    ||||| |||||||  | ||||||||||||||||| ||||||||||||||||||||| || |||||||||    |||||||| |||||   | |||||| |    
T  2518748 atgagaatgttgcattggatgtgtggtaagactagatgagataggattagaaatgacaa-attagagagaaaattggggtagcacctcaagtagaaaaga 2518650  T
Q  208 tgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatcaa 284  Q
    || || |||||||  ||||||||||||| ||| |||||||||||| | |||||| |||||  ||||||||| |||||    
T  2518649 tggtggaaaataggtttaggtggtttgattatgtagagagaagacttgtagattttgtaggaaagagagtatatcaa 2518573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 290
Target Start/End: Complemental strand, 10824497 - 10824339
Alignment:
Q  132 gtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggt 231  Q
    |||||||||||||| ||| |||| |||||||||| ||||||||||||||||| || | ||||||  | |||||| ||| |  ||||||| ||||||||||    
T  10824497 gtgtggtaagactagatgggatatgattagaaataaaaatattagagagttgaggcagcacctaaagtagaaaagatggtcgaaaataggcttaggtggt 10824398  T
Q  232 ttgagtatatagagagaagacctttagattatgtagttaagagagtagatcaattggag 290  Q
    ||| |||| |||||| |||||   |||||| ||||||   ||||||||||||| |||||    
T  10824397 ttgggtatttagagaaaagactcatagattttgtagtatggagagtagatcaaatggag 10824339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 261
Target Start/End: Complemental strand, 45512870 - 45512699
Alignment:
Q  95 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt------agagagttggggta 188  Q
    ||||||||||||| || ||||| ||||| || | ||||||||||||||||| || || |||| |||||||||||||||||      || |||||||||||    
T  45512870 aaataagcatagcggagatgagaatgtttcgttggatgtgtggtaagactagat-aggtagggttagaaatgaaaatattaaagagagggagttggggta 45512772  T
Q  189 acacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagatt 261  Q
     ||||||| | |||||| |||||| ||||||  ||||| ||||||| | ||||| |||||||| || ||||||    
T  45512771 gcacctatagtagaaaagatgatggaaaataagcttagatggtttgggcatataaagagaagatctctagatt 45512699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 151 - 284
Target Start/End: Original strand, 44373740 - 44373877
Alignment:
Q  151 gataggattagaaatgaaaatattagag----agttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagaga 246  Q
    ||||||||||||||||||||||||||||    |||||| ||| ||||||  | |||||| ||| || ||||||| |||  |||||||||| || |||||     
T  44373740 gataggattagaaatgaaaatattagagtgagagttggagtagcacctaaagtagaaaagatggtggaaaataggcttgagtggtttgagcatgtagagt 44373839  T
Q  247 gaagacctttagattatgtagttaagagagtagatcaa 284  Q
     ||||||| |||||| |||||| |||||||||||||||    
T  44373840 aaagacctatagattttgtagtaaagagagtagatcaa 44373877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 252
Target Start/End: Complemental strand, 18474296 - 18474173
Alignment:
Q  129 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggt 228  Q
    ||||||||||||| ||| ||| ||||| | ||||||||| |||||||||||||| | ||| ||||||| | |||||  ||| || ||| ||| ||||| |    
T  18474296 gatgtgtggtaaggctagatgtgatagaaatagaaatgacaatattagagagttagagtagcacctatagtagaaatgatggtggaaactaggcttagtt 18474197  T
Q  229 ggtttgagtatatagagagaagac 252  Q
    |||||||| || ||||||||||||    
T  18474196 ggtttgagcatgtagagagaagac 18474173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 29520585 - 29520653
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    |||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||| |  |||||||||    
T  29520585 atgaggatgttgcgttggatgtgtggtaagactagatgggataggattagaaatgataccattagagag 29520653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 13172020 - 13171865
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacc 193  Q
    |||||| | |||| ||||| |||||||  | ||||||| ||||||||| | | ||||||||||||||||| || |||    |||||||||||| | ||||    
T  13172020 taagcacatcagagatgagaatgttgcattggatgtgtagtaagactagacgggataggattagaaatgacaagattagagagagagttggggaagcacc 13171921  T
Q  194 tatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaa 249  Q
    ||| | |||||| ||| || ||||||  ||||||||||||| | ||||| ||||||    
T  13171920 tatagtagaaaagatggtggaaaatatgcttaggtggtttgggcatataaagagaa 13171865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 259
Target Start/End: Original strand, 45419164 - 45419313
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag--ttggggtaacacctatggcagaaaaaatg 209  Q
    |||| ||||||||| | |||  |||||||||||| | | |||| |||||| ||||| |  |||||||||  |||||||| ||||||| | |||||| |||    
T  45419164 atgaagatgttgcgttggattagtggtaagactagaagggataagattaggaatgacaccattagagagaattggggtagcacctatagtagaaaagatg 45419263  T
Q  210 atgaaaaatagacttaggtggtttgagtatatagagagaagacctttaga 259  Q
     |  ||||||||||||||||||||| | || |||||| ||||||| ||||    
T  45419264 gtataaaatagacttaggtggtttgggcatgtagagataagacctgtaga 45419313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 16252857 - 16252989
Alignment:
Q  109 gaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcagaaaaa 206  Q
    ||||||||||||||| | | |||||||||||||| || ||||||||  ||||||||||| || |||  ||||||||| |||  | ||||||| ||||||     
T  16252857 gaaatgaggatgttgtgttggatgtgtggtaagattagatgagataaaattagaaatgacaacattagagagagttgaggttgctcctatggaagaaaag 16252956  T
Q  207 atgatgaaaaatagacttaggtggtttgagtat 239  Q
    |||||  ||| ||||||  | ||||||||||||    
T  16252957 atgatagaaactagactaggatggtttgagtat 16252989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 283
Target Start/End: Original strand, 32043522 - 32043690
Alignment:
Q  119 tgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaaaaatgatgaa 214  Q
    ||||||| | ||||||||||||||||| | | ||||| ||||||||||| || |||    |||||||||||||| ||||||| | | |||| ||| |  |    
T  32043522 tgttgcgttggatgtgtggtaagactagacgggatagaattagaaatgacaacattagagagagagttggggtatcacctatagtacaaaagatggtaga 32043621  T
Q  215 aaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    || ||||||| |||||||||   || |||||||||||||| | |||  |||||| | |||| |||||||    
T  32043622 aactagactttggtggtttggccatgtagagagaagacctgtggatgttgtagtaaggagaatagatca 32043690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 43732484 - 43732543
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaa 163  Q
    ||||||||||||||||||| || | ||||||||||||||||| ||| ||||| |||||||    
T  43732484 tagcagaaatgaggatgttacgttggatgtgtggtaagactagatgtgatagaattagaa 43732543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 25288810 - 25288876
Alignment:
Q  95 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattag 161  Q
    |||||||  ||||||| |||||||||||| ||| |||  |||||||||||| |||||||||||||||    
T  25288810 aaataagtgtagcagatatgaggatgttgagctggattagtggtaagactagatgagataggattag 25288876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 25300145 - 25300211
Alignment:
Q  95 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattag 161  Q
    |||||||  ||||||| |||||||||||| ||| |||  |||||||||||| |||||||||||||||    
T  25300145 aaataagtgtagcagatatgaggatgttgagctggattagtggtaagactagatgagataggattag 25300211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 283
Target Start/End: Complemental strand, 41972131 - 41971960
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattag--agagttggggtaacacctatggcagaaaaaatg 209  Q
    ||||||||||||   | |||||||| ||||| || ||||||||| ||||||||||| ||||||||  |||||| ||||||||||||  | |||||| |||    
T  41972131 atgaggatgttgtattggatgtgtgataagatta-atgagatagaattagaaatgagaatattagagagagttagggtaacaccta-agtagaaaagatg 41972034  T
Q  210 atgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
     || ||||||   ||||||||||||   || |||||||||||| | |||||| | |||  | ||||||||||||    
T  41972033 gtggaaaataagtttaggtggtttggacatgtagagagaagacgtgtagattttctagcaaggagagtagatca 41971960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 281
Target Start/End: Original strand, 9695595 - 9695729
Alignment:
Q  151 gataggattagaaatgaaaatattagagag----ttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagaga 246  Q
    ||||| ||||||||||| || |||| ||||    |||||||| ||||||| | |||||| ||| || ||| | | ||||||||||||| | || ||||||    
T  9695595 gatagaattagaaatgacaacattatagagatatttggggtagcacctatagtagaaaagatggtggaaactcggcttaggtggtttgggcatgtagaga 9695694  T
Q  247 gaagacctttagattatgtagttaagagagtagat 281  Q
    |||| ||| |||||| || ||| ||||||||||||    
T  9695695 gaagtcctgtagattctgaagtaaagagagtagat 9695729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 283
Target Start/End: Complemental strand, 44681379 - 44681221
Alignment:
Q  129 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag----ttggggtaacacctatggcagaaaaaatgatgaaaaatagactt 224  Q
    ||||||||||||||||| | |||||| |||||||||||| || |||||||||    ||| |||| |||||||   |||||| ||| || ||||||  |||    
T  44681379 gatgtgtggtaagactagacgagataagattagaaatgacaacattagagagacagttgtggtagcacctataatagaaaagatggtggaaaataagctt 44681280  T
Q  225 aggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    ||  ||||||   || |||||||||||||| |||||| || ||  | ||||||||||||    
T  44681279 agaaggtttggaaatctagagagaagacctatagattctgcagcaatgagagtagatca 44681221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 15215628 - 15215560
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    |||||||||||| ||| |||| ||||||||||||||   ||||||||||||||||| |  |||||||||    
T  15215628 atgaggatgttgtgctggatgagtggtaagactatacaggataggattagaaatgacaccattagagag 15215560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 30456576 - 30456501
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||||||||||||| | ||||||||||||||| | ||| ||||| |||||||||||  | |||||||||    
T  30456576 tagcagagatgaggatgttgcgttggatgtgtggtaagacca-atgggatagaattagaaatgacgacattagagag 30456501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 28300469 - 28300414
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 167  Q
    |||||||||||| | | ||||||| ||||||||| |||||||| ||||||||||||    
T  28300469 atgaggatgttgtgttggatgtgtagtaagactagatgagataagattagaaatga 28300414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 37077690 - 37077745
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 167  Q
    |||||||||||||||| |||| ||||||| |||| | ||||||||||||| |||||    
T  37077690 atgaggatgttgcgctggatgagtggtaaaactagacgagataggattaggaatga 37077745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 5908683 - 5908746
Alignment:
Q  218 tagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    ||||||||| |||||||   ||||||||||||||||| |||||| |||||| | ||||||||||||    
T  5908683 tagacttagttggtttgg--atatagagagaagacctgtagattttgtagtaaggagagtagatca 5908746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 12611527 - 12611633
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagag 274  Q
    |||||| ||| ||| ||||||  | |||||| ||| || ||| ||| ||||||||||||| |||| |||| |||| |||| | |||||| |||| |||||    
T  12611527 agagagctggtgtagcacctaaagtagaaaagatggtggaaactaggcttaggtggtttgcgtatgtagacagaacacctgtggattatatagtaaagag 12611626  T
Q  275 agtagat 281  Q
    |||||||    
T  12611627 agtagat 12611633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 25439394 - 25439468
Alignment:
Q  114 gaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggta 188  Q
    |||||||||||||| |||  |||||||||||| ||||||||||| ||| || || |  |||||||||| ||||||    
T  25439394 gaggatgttgcgctggattagtggtaagactagatgagataggaataggaacgataccattagagagtgggggta 25439468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 16705706 - 16705755
Alignment:
Q  131 tgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||||||||||| ||| ||||| ||||||||||| || |||||||||    
T  16705706 tgtgtggtaagactagatgggatagaattagaaatgacaacattagagag 16705755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 10080262 - 10080194
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    |||| ||||||||| | | ||| ||||||||||| | |||||| |||||||||||| || |||||||||    
T  10080262 atgatgatgttgcgttgggtgtttggtaagactagacgagataagattagaaatgacaacattagagag 10080194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 17491870 - 17491818
Alignment:
Q  216 aatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 268  Q
    |||| |||||||||||||| |||| |||||||||||||| || ||| ||||||    
T  17491870 aataaacttaggtggtttgggtatgtagagagaagacctatacattttgtagt 17491818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 36395315 - 36395239
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  36395315 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgacaccattagagag 36395239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 254
Target Start/End: Original strand, 33083969 - 33084129
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacc 193  Q
    ||||| ||||||||||||||||| |||| | ||||||||||||||||| ||| ||||| |||||||||||  |||||    |||||||||||||| ||||    
T  33083969 taagcgtagcagaaatgaggatgctgcgttggatgtgtggtaagactagatgggatagaattagaaatgacgatattagagagagagttggggtagcacc 33084068  T
Q  194 tatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacct 254  Q
    ||||| |||||| ||| |  ||| ||||||||||||||||| | || ||||||||||||||    
T  33084069 tatggtagaaaagatggtagaaactagacttaggtggtttgggaatgtagagagaagacct 33084129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 233
Target Start/End: Original strand, 31818437 - 31818582
Alignment:
Q  86 atgaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggg 185  Q
    ||||| || |||||||  ||||||| ||||| |||||||  | ||| |||| ||||| || |||||||| |||||||||||||| ||||  ||||| |||    
T  31818437 atgagaataaaataagtgtagcagagatgagaatgttgcattggatatgtgttaagattagatgagataagattagaaatgaaattatt--agagtcggg 31818534  T
Q  186 gtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggttt 233  Q
    ||| ||||||| | | |||||||| || ||||||||||||||||||||    
T  31818535 gtagcacctatagtacaaaaaatggtggaaaatagacttaggtggttt 31818582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 8364520 - 8364623
Alignment:
Q  131 tgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtgg 230  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||||||| |||||| ||| || |||| | ||||||  || |  ||||||| |||||||||    
T  8364520 tgtgtggtaagactagatgggataggattagaaatgacaatattagacagttggagtagcaactatagtagaaaaggtggttgaaaataggcttaggtgg 8364619  T
Q  231 tttg 234  Q
    ||||    
T  8364620 tttg 8364623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 33998375 - 33998293
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||| ||||||| |||| ||||||||| | ||||||||||||||||| ||| |||||||||||||||||  | |||||||||    
T  33998375 taagcgtagcagagatgaagatgttgcgttggatgtgtggtaagactagatgtgataggattagaaatgactacattagagag 33998293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 12134272 - 12134190
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||||||||| ||||| |||||| | | ||||||||| ||||| | |||| |||| ||||||||||| ||||||||||||    
T  12134272 taagcatagcagagatgagaatgttgtgttggatgtgtggcaagacaagatgatatagaattagaaatgacaatattagagag 12134190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 278
Target Start/End: Original strand, 2079288 - 2079435
Alignment:
Q  135 tggtaagactatatgagataggat-tagaaatgaaaatattagagagt---tggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtgg 230  Q
    ||||||||||| |||||||| ||| ||||||||| ||||||||||||    | ||||| || |||| | |||||| ||| || ||||||| |||| ||||    
T  2079288 tggtaagactaaatgagatatgatatagaaatgacaatattagagagggagttgggtagcatctatagtagaaaagatggtggaaaataggcttaagtgg 2079387  T
Q  231 tttgagtatatagagagaagacctttagattatgtagttaagagagta 278  Q
    |||  |||| |||||||||||  | ||||||||||||| | |||||||    
T  2079388 tttaggtatgtagagagaagatttgtagattatgtagtaaggagagta 2079435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 5129194 - 5129126
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    |||||||||||||| |  ||||||||||||| |  ||| ||| ||||||||||||| ||||||||||||    
T  5129194 atgaggatgttgcgttgaatgtgtggtaagattcgatgtgatcggattagaaatgacaatattagagag 5129126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 260
Target Start/End: Original strand, 608084 - 608234
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcagaaaaaatg 209  Q
    ||||||||||| || | |||| |||||||||||| ||  ||||||||||| ||||| |  |||  |||||||  ||||| ||||||| | ||||||  ||    
T  608084 atgaggatgttccgttggatgagtggtaagactagataggataggattaggaatgacaccattagagagagtgagggtatcacctatagtagaaaagttg 608183  T
Q  210 atgaaaaatagacttaggtggtttgagtatatagagagaagacctttagat 260  Q
    ||  ||||||| ||||| |||||||   || |||||||||||||| |||||    
T  608184 atagaaaataggcttagatggtttggacatgtagagagaagacctgtagat 608234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 234
Target Start/End: Complemental strand, 6641764 - 6641640
Alignment:
Q  114 gaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattag----agagttggggtaacacctatggcagaaaaaatg 209  Q
    |||||||||||| | ||||| | ||||||||| ||| |||| |||| ||||||| ||||||||    |||||||||||| ||||||| | |||||| |||    
T  6641764 gaggatgttgcgttcgatgttttgtaagactagatgggataagattggaaatgacaatattagagatagagttggggtatcacctatagtagaaaagatg 6641665  T
Q  210 atgaaaaatagacttaggtggtttg 234  Q
     |  ||| ||||||| ||| |||||    
T  6641664 gtagaaactagacttgggttgtttg 6641640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 7513335 - 7513285
Alignment:
Q  117 gatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 167  Q
    ||||||||| | ||||||||||||||||| |||||||| |||| |||||||    
T  7513335 gatgttgcgttggatgtgtggtaagactagatgagataagatttgaaatga 7513285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 283
Target Start/End: Original strand, 546922 - 547094
Alignment:
Q  110 aaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatg 209  Q
    |||| ||||||||||| | |||||||| ||| |||| || ||||| ||||| ||||||  ||||||||||||| | ||| || |||| | ||  || |||    
T  546922 aaataaggatgttgcgttggatgtgtgataaaactagataagatatgattaaaaatgaccatattagagagttagagtagcatctatagtagggaagatg 547021  T
Q  210 atgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    ||| |||| | |||| ||   |||||  || || ||||||||||| || ||| |||||| ||||||||||||||    
T  547022 atggaaaacaaactt-ggatttttgaacatgtaaagagaagacctataaattttgtagtaaagagagtagatca 547094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 4796889 - 4796941
Alignment:
Q  137 gtaagactatatgagataggattagaaatgaaaatattagagagttggggtaa 189  Q
    |||| |||| || |||||||||||||| ||| ||||||||||||||| |||||    
T  4796889 gtaaaactagataagataggattagaattgacaatattagagagttgtggtaa 4796941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 9594069 - 9594001
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    |||||||||||||| | |||| |||||||||||| | | ||||||||||| ||||| |  |||||||||    
T  9594069 atgaggatgttgcgttggatgagtggtaagactagacgggataggattaggaatgacaccattagagag 9594001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 95 - 283
Target Start/End: Complemental strand, 42510385 - 42510198
Alignment:
Q  95 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaa-tgaaaatattagagagttggggtaacacc 193  Q
    |||||||||||||||| |||||||||||||  | ||||||||||||||||| ||| |||||| ||||||| ||| |||| ||| |||||||| || ||||    
T  42510385 aaataagcatagcagagatgaggatgttgcattggatgtgtggtaagactagatgggataggtttagaaattgataatactagggagttgggatagcacc 42510286  T
Q  194 tatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    ||| | |||||| ||  || ||||||| ||||||||||||  | | ||  ||||||||||| |||||| ||| || | ||||||||||||    
T  42510285 tatagtagaaaagatagtggaaaataggcttaggtggttt--ggacatgtagagaagacctatagattttgtggtaaggagagtagatca 42510198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 260
Target Start/End: Original strand, 54128289 - 54128455
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagaga----gttggggtaacacc 193  Q
    ||||| ||||||| |||||||||||||| |||||| ||||||| |||| | | ||||||||||  ||||| |  ||||||||    ||||||||| ||||    
T  54128289 taagcttagcagagatgaggatgttgcgtttgatgagtggtaaaactagacgcgataggattatgaatgacaccattagagagagtgttggggtagcacc 54128388  T
Q  194 tatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagat 260  Q
    ||| | |||||| ||| |  ||||||| ||||||||||||| | || |||||| ||||||| |||||    
T  54128389 tatagtagaaaagatggtagaaaataggcttaggtggtttgggcatgtagagaaaagacctgtagat 54128455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 284
Target Start/End: Complemental strand, 36820309 - 36820142
Alignment:
Q  119 tgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcagaaaaaatgatgaaaa 216  Q
    ||||||| | ||||||||||||||||| | |||||||||||||||||||  | |||  |||||||||||||| |||||||   || ||| ||| || |||    
T  36820309 tgttgcgttggatgtgtggtaagactagacgagataggattagaaatgacgacattagagagagttggggtagcacctatattagcaaagatggtggaaa 36820210  T
Q  217 atagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatcaa 284  Q
     ||| ||||||||||||    || || ||||||||||  ||||||||||||| | ||| |||||||||    
T  36820209 ctaggcttaggtggtttagacatgtaaagagaagacccatagattatgtagtaaggagggtagatcaa 36820142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 268
Target Start/End: Complemental strand, 2341088 - 2340911
Alignment:
Q  95 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag----ttggggtaac 190  Q
    ||||||| ||||  || |||||||||||||  | ||||||||||||||||| |   ||||| |||||||||||||| |||||||||    |||||||| |    
T  2341088 aaataaggatagtggagatgaggatgttgcattggatgtgtggtaagactagacatgatagaattagaaatgaaaacattagagagggtgttggggtagc 2340989  T
Q  191 acctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 268  Q
    |||  | | |||||| ||| || |||||   |||| |||||||||| || |||||| |||| || |||||||||||||    
T  2340988 accattcgtagaaaagatggtggaaaatcatcttacgtggtttgagcatgtagagaaaagatctatagattatgtagt 2340911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 22902751 - 22902799
Alignment:
Q  132 gtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  22902751 gtgtggtaacactatatgcgataggattagaaatgaaaatattagagag 22902799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 283
Target Start/End: Complemental strand, 39601020 - 39600863
Alignment:
Q  130 atgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagactta 225  Q
    |||||||||||||||| ||| |||| |||||||||||| || |||    ||||||||||||||  |||||| | |||||| ||| || |||| |  ||||    
T  39601020 atgtgtggtaagactagatgggataagattagaaatgacaacattagagagagagttggggtagtacctatagtagaaaagatggtggaaaacaagctta 39600921  T
Q  226 ggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    ||||||||  | || || ||||||||||| |||||| |||||  | ||||||||||||    
T  39600920 ggtggttttggcatgtaaagagaagacctgtagattctgtagcgaggagagtagatca 39600863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 54365290 - 54365194
Alignment:
Q  153 taggattagaaatgaaaatattag--agagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagaga 248  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||| | |||||| |||  | ||||||| ||||||||||||| | || ||||||||    
T  54365290 taggattagaaatgaaaatattagagagagttggggtagcacctatagtagaaaatatggcggaaaatag-cttaggtggtttgggcatgtagagaga 54365194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 283
Target Start/End: Complemental strand, 34719362 - 34719254
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagag 274  Q
    |||||||||||||| ||||||| | |||||| ||| || ||| |  ||||||||| |||||  ||||||||||||| ||| | |||| |||||| | |||    
T  34719362 agagagttggggtagcacctatcgtagaaaagatggtggaaagtcaacttaggtgttttgaacatatagagagaaggcctgttgattttgtagtaaggag 34719263  T
Q  275 agtagatca 283  Q
    |||||||||    
T  34719262 agtagatca 34719254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 260
Target Start/End: Original strand, 52138696 - 52138877
Alignment:
Q  83 aagatgaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agag 178  Q
    |||||||| || || ||||  ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||    ||||    
T  52138696 aagatgagaatcaagtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagagag 52138795  T
Q  179 agttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagat 260  Q
    ||| |||||| ||||||| | ||||||  || |  ||||||| ||||| ||||||| | || |||||||||||||| |||||    
T  52138796 agtgggggtagcacctatagtagaaaagttggtagaaaataggcttagatggtttgggcatgtagagagaagacctgtagat 52138877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 45728063 - 45728126
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 167  Q
    ||||||| |||||||||||||||| |||| |||||||||| | | || ||||||||||||||||    
T  45728063 tagcagagatgaggatgttgcgctggatgagtggtaagacgagacgaaataggattagaaatga 45728126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 345082 - 345000
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    |||||||||| ||||| ||||||||  | | ||| ||||||||||||| | |||||||||||||||||||  | |||||||||    
T  345082 taagcatagcggaaattaggatgttatgttggatttgtggtaagactagacgagataggattagaaatgatgacattagagag 345000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 23534952 - 23534858
Alignment:
Q  86 atgaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||| || |||||||| |||| || | |||||||||||| | ||||| || ||| |||| || ||||| |||||||||||| ||||||||||||    
T  23534952 atgagaataaaataagcgtagcggagaagaggatgttgcgttagatgtttgataaaactagatcagataagattagaaatgacaatattagagag 23534858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 41842792 - 41842686
Alignment:
Q  184 gggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    ||||| ||||||| | |||||| ||| || |||  || ||||||||||||| |||| ||||||||||| |  |||||| |||||| | ||||||||||||    
T  41842792 gggtagcacctatagtagaaaagatggtggaaaccagtcttaggtggtttgggtatgtagagagaagagcggtagattctgtagtaatgagagtagatca 41842693  T
Q  284 attggag 290  Q
    | |||||    
T  41842692 aatggag 41842686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 234
Target Start/End: Complemental strand, 44134164 - 44134061
Alignment:
Q  129 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggt 228  Q
    |||||||| |||||||||  ||||| ||| ||||||| | || ||||| ||||||||||| | ||| | | |||||| ||| || |||||||||||||||    
T  44134164 gatgtgtgataagactat--gagatgggactagaaattacaacattagtgagttggggtagcgcctctagtagaaaagatggtggaaaatagacttaggt 44134067  T
Q  229 ggtttg 234  Q
    ||||||    
T  44134066 ggtttg 44134061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 254
Target Start/End: Complemental strand, 50960922 - 50960844
Alignment:
Q  176 gagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacct 254  Q
    ||||||||||||| ||||||| | |||||| ||| |  ||||||| ||||||||||||| | || ||||||||||||||    
T  50960922 gagagttggggtagcacctatagtagaaaagatggtagaaaataggcttaggtggtttgggcatgtagagagaagacct 50960844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 3987039 - 3987116
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagac 252  Q
    |||||||||||||| ||||||| | |||||| ||| |  ||| ||||||||||||||||| | || ||||||||||||    
T  3987039 agagagttggggtatcacctatagtagaaaagatggtagaaactagacttaggtggtttgggaatgtagagagaagac 3987116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 283
Target Start/End: Original strand, 21200542 - 21200648
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagag 274  Q
    ||||| |||||||| ||||||  | |||||| ||| || ||| ||||||||||||||||| | || |||||||||||| | |||||| || ||| | |||    
T  21200542 agagaattggggtagcaccta--gtagaaaagatggtggaaactagacttaggtggtttgggcatgtagagagaagacatgtagattctgcagtaaggag 21200639  T
Q  275 agtagatca 283  Q
    |||||||||    
T  21200640 agtagatca 21200648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 268
Target Start/End: Original strand, 46140349 - 46140517
Alignment:
Q  102 catagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattag--agagttggggtaacacctatggc 199  Q
    ||||||||| |||| ||||||||  |  |||| | ||||||||| | |  ||| |||||||| ||| ||||||||  ||||||||||||| || | | |     
T  46140349 catagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagt 46140448  T
Q  200 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 268  Q
    |||||| | | || ||| |||||| ||||||||||   ||||||||||||||||| |||||| ||||||    
T  46140449 agaaaagacggtggaaactagactcaggtggtttggacatatagagagaagacctgtagattctgtagt 46140517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 283
Target Start/End: Original strand, 50249289 - 50249487
Alignment:
Q  95 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagatag---gattagaaatgaaaatatt----agagagttggggt 187  Q
    ||||||||||||| || |||| |||||| || | ||||||||||| ||||| | |||||||   |||||||||||| || |||    |||||||||||||    
T  50249289 aaataagcatagcggagatgatgatgtttcgttggatgtgtggtaggactagacgagataggatgattagaaatgataacattagagagagagttggggt 50249388  T
Q  188 aacacctatggcagaaaaaatgatgaaaaatagactta---ggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    | | | ||| | |||||| ||| || ||| ||||||||   ||||||||| | || ||||| |||||| | |||||| | |||| | ||||||||||||    
T  50249389 agcgcgtatagtagaaaagatggtggaaactagacttaggtggtggtttgggcatgtagagtgaagacatgtagattctttagtaaggagagtagatca 50249487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 253
Target Start/End: Original strand, 25191296 - 25191447
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag--ttggggtaacacctatggcag 201  Q
    ||||||| |||||||||||||||| |||| |||||||||||| |   |||| |||||  ||||| |  |||||||||  | |||||| ||||||| | ||    
T  25191296 tagcagagatgaggatgttgcgctggatgagtggtaagactagacatgatatgattaagaatgacatcattagagagaatgggggtagcacctatagtag 25191395  T
Q  202 aaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 253  Q
    ||||| ||    ||||||||||||| |||||||   || |||||||||||||    
T  25191396 aaaaattggaagaaaatagacttagatggtttggacatgtagagagaagacc 25191447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 50621741 - 50621649
Alignment:
Q  88 gaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    |||||| |||||||  |||| || ||||| |||||||  ||||| ||||||||||||||    ||||||||||||||||| || |||||||||    
T  50621741 gaggataaaataagtgtagcggagatgagaatgttgcatttgatatgtggtaagactatgaatgataggattagaaatgacaacattagagag 50621649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 48777555 - 48777509
Alignment:
Q  129 gatgtgtggtaagactatatgagataggattagaaatgaaaatatta 175  Q
    ||||||||||||||||| | |||||| ||||| ||||||||||||||    
T  48777555 gatgtgtggtaagactaaaagagatatgattaaaaatgaaaatatta 48777509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 30573040 - 30572995
Alignment:
Q  223 ttaggtggtttgagtatatagagagaagacctttagattatgtagt 268  Q
    |||||||||||||  || |||||||||||||| |||||||||||||    
T  30573040 ttaggtggtttgatcatgtagagagaagacctatagattatgtagt 30572995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 2198836 - 2198876
Alignment:
Q  152 ataggattagaaatgaaaatattagagagttggggtaacac 192  Q
    ||||||||| |||||| ||||||||||||||| ||||||||    
T  2198836 ataggattaaaaatgacaatattagagagttgaggtaacac 2198876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 14783621 - 14783661
Alignment:
Q  243 gagagaagacctttagattatgtagttaagagagtagatca 283  Q
    |||||||||| ||||||||||||||| | ||||||||||||    
T  14783621 gagagaagacgtttagattatgtagtaaggagagtagatca 14783661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 38054694 - 38054626
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||| |||||||| |  ||| |||||||||||| | | ||||||||||||||||| || |||||||||    
T  38054694 atgagaatgttgcgttgaatgggtggtaagactagacgggataggattagaaatgataacattagagag 38054626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 46568033 - 46568109
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||||||||||| | | |||||||| |||||||| |  |||| | ||||||||||| || |||||||||    
T  46568033 tagcagagatgaggatgttgtgttggatgtgtgttaagactagaccagattgaattagaaatgacaacattagagag 46568109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 51448074 - 51447998
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  51448074 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgacaccattagagag 51447998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 55244245 - 55244345
Alignment:
Q  130 atgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtg 229  Q
    |||||||||||||||  | | |||| |||||| ||||| || ||||||||||||| | ||||||||| | |||||| ||| || |||  || ||||||||    
T  55244245 atgtgtggtaagacttgacgggataagattagtaatgacaacattagagagttggtgcaacacctatagtagaaaagatggtggaaacaaggcttaggtg 55244344  T
Q  230 g 230  Q
    |    
T  55244345 g 55244345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 104 - 268
Target Start/End: Complemental strand, 30200324 - 30200160
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaa 203  Q
    ||||||| |||||||||||| | | |||||||||||||| || ||| |||| |||||||||||| || ||||||||||| ||||||||||||| | ||||    
T  30200324 tagcagagatgaggatgttgtgttggatgtgtggtaagattagatgggatatgattagaaatgacaacattagagagttagggtaacacctatagtagaa 30200225  T
Q  204 aaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 268  Q
    || ||| || ||| ||| |||||||| |||  | || || | |||||||||  ||||||||||||    
T  30200224 aagatggtggaaactaggcttaggtgattttggcatgtaaatagaagacctcgagattatgtagt 30200160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 109 - 290
Target Start/End: Complemental strand, 48736259 - 48736074
Alignment:
Q  109 gaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatta----gagagttggggtaacacctatggcagaaa 204  Q
    ||||||||||||||||| |  |||||||||||||||| ||||||||  |||||||||||  | ||||    ||||||||||||| ||||||  | |||||    
T  48736259 gaaatgaggatgttgcgttgaatgtgtggtaagactagatgagataaaattagaaatgacgacattatagagagagttggggtagcacctacagtagaaa 48736160  T
Q  205 aaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatcaattggag 290  Q
    | |||    ||| |||||||||||||||||   || ||||| |||||||| | ||||||||||||| ||||||||||||| |||||    
T  48736159 agatgggagaaactagacttaggtggtttgctcatgtagagcgaagacctgtggattatgtagttaggagagtagatcaaatggag 48736074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 283
Target Start/End: Complemental strand, 36514570 - 36514389
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcag 201  Q
    ||||||| |||||||||||||| | ||||||||||||||||| | | ||||| |||||||| || || |||  |||||||||||||| ||||||| | ||    
T  36514570 tagcagagatgaggatgttgcgttggatgtgtggtaagactaaacgggatagaattagaaaggacaacattagagagagttggggtagcacctatagtag 36514471  T
Q  202 aaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    |||| ||| |  ||| ||||||||||||||||| | || |||||||| ||| | | |||| ||||||   ||||||||||||    
T  36514470 aaaagatggtagaaactagacttaggtggtttgggcatgtagagagacgacttgtggattctgtagtatggagagtagatca 36514389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 283
Target Start/End: Original strand, 39811856 - 39812057
Alignment:
Q  86 atgaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagt 181  Q
    ||||| || ||| |||| |||| || |||||||||||||  | ||||||||||||||||| | | ||||||||||||||||| || |||    |||||||    
T  39811856 atgagaataaaacaagcgtagcggatatgaggatgttgctttggatgtgtggtaagactagacgtgataggattagaaatgacaacattagagagagagt 39811955  T
Q  182 tggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagat 281  Q
    ||||| | |||||||   |||||||||| |||||| | | ||||||| ||||| | || |||||||||||  | |||||| | |||| | ||||||||||    
T  39811956 tggggcagcacctatcatagaaaaaatggtgaaaactcggcttaggtagtttgggcatgtagagagaagagatgtagattctatagtaaggagagtagat 39812055  T
Q  282 ca 283  Q
    ||    
T  39812056 ca 39812057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 281
Target Start/End: Original strand, 5335839 - 5336018
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagag--agttggggtaacacctatggcag 201  Q
    ||||||| |||||||||||||| |  |||||||||||||||| |    ||   ||||||||||| || |||||||  |||||||||| || |||| | ||    
T  5335839 tagcagagatgaggatgttgcgttgaatgtgtggtaagactagacagaatgcaattagaaatgataacattagagagagttggggtagcatctatagtag 5335938  T
Q  202 aaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagat 281  Q
     ||| ||| |  ||| ||||||||||||||||| | |||||||||||||| || | |||| |||||||| ||||||||||    
T  5335939 gaaagatggtcgaaactagacttaggtggtttgggcatatagagagaagaactgtggattctgtagttaggagagtagat 5336018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 283
Target Start/End: Complemental strand, 19262788 - 19262616
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag--ttggggtaacacctatggcagaaaaaatg 209  Q
    ||||||||||| ||  |||| |||||||| |||| |   |||||  |||||||||| ||||||||||||  |||||||| ||||||| | |||||| |||    
T  19262788 atgaggatgttacgtgtgatatgtggtaatactagacatgatagagttagaaatgacaatattagagagagttggggtagcacctattgtagaaaagatg 19262689  T
Q  210 atgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
     |  ||| | | ||||||||||||||| || |||||||||||||| |||||| |||||| |  |||||||||||    
T  19262688 gtagaaacttggcttaggtggtttgagcatgtagagagaagacctgtagatt-tgtagtaagaagagtagatca 19262616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 261
Target Start/End: Complemental strand, 25579445 - 25579281
Alignment:
Q  95 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagt-tgggg--taaca 191  Q
    |||||||| |||  || |||||||||||||| | |||||||||||| ||||     |||||||||||||||||  | |||||||||  |||||  || ||    
T  25579445 aaataagcgtagaggagatgaggatgttgcgttggatgtgtggtaatacta-----gataggattagaaatgaccacattagagagagtggggagtagca 25579351  T
Q  192 cctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagatt 261  Q
    || || |||||||||||| || ||||||| ||||||||||||| | || |||||||||||| | ||||||    
T  25579350 cccatagcagaaaaaatggtggaaaataggcttaggtggtttggggatgtagagagaagacatgtagatt 25579281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 283
Target Start/End: Original strand, 47848599 - 47848774
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagag----agttggggtaacacctatggcagaaaaaa 207  Q
    |||||||||||| | | ||||||||||||||||| | | |||||||| |||| ||| || |||||||    |||||||||| | ||||| | |||||| |    
T  47848599 atgaggatgttgtgttggatgtgtggtaagactagacgggataggatcagaagtgataacattagagagagagttggggtagcgcctatagtagaaaaga 47848698  T
Q  208 tgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    || || ||||||| ||||||||||||| | || | |||||||||| | || ||| |||| | | ||||||||||||    
T  47848699 tggtggaaaataggcttaggtggtttgggcatgtcgagagaagacttgtaaattctgtactaaggagagtagatca 47848774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 42187462 - 42187568
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagag 274  Q
    ||||||| |||||| |||||||   |||||| ||| || ||||||| ||||||||||||| | || || ||||||| ||| ||||||||||||| | |||    
T  42187462 agagagtcggggtagcacctataatagaaaagatggtggaaaataggcttaggtggtttgggcatgtaaagagaaggcctgtagattatgtagtaaggag 42187561  T
Q  275 agtagat 281  Q
    |||||||    
T  42187562 agtagat 42187568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 283
Target Start/End: Complemental strand, 27893864 - 27893733
Alignment:
Q  151 gataggattagaaatgaaaatattagagag--ttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagaga 248  Q
    |||||||||||||| || ||||||||||||  ||| |||||||||||| | |||| | ||| || ||||||| ||||||||||||||  || ||||   |    
T  27893864 gataggattagaaacgacaatattagagagagttgaggtaacacctatagtagaatagatggtggaaaataggcttaggtggtttgaacatgtaga---a 27893768  T
Q  249 agacctttagattatgtagttaagagagtagatca 283  Q
    ||| || |||||| |||| ||| ||||||||||||    
T  27893767 agatctgtagattttgtacttaggagagtagatca 27893733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 253
Target Start/End: Original strand, 37617861 - 37618015
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggc 199  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |  |||||||||||| ||||| |  |||    ||||||| |||||| ||||||| |     
T  37617861 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaagataggattaggaatgacaccattagagagagagtgggggtagcacctatagt 37617960  T
Q  200 agaaaaaatgat-gaaaaatagacttaggtggtttgagtatatagagagaagacc 253  Q
    ||||||  || | ||||||||| ||||| ||||||| | || |||||||||||||    
T  37617961 agaaaagttggtagaaaaataggcttagatggtttgggcatgtagagagaagacc 37618015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 25826806 - 25826759
Alignment:
Q  133 tgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||||||| ||| |||||||||||||||||||||| |||||||||    
T  25826806 tgtggtaagaccatacgagataggattagaaatgaaaacattagagag 25826759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 283
Target Start/End: Complemental strand, 18605390 - 18605328
Alignment:
Q  221 acttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    |||||||||||||||| || |||||||||||| | |||||||| |||||| |||| |||||||    
T  18605390 acttaggtggtttgagcatgtagagagaagacatgtagattatatagttaggagattagatca 18605328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 18637600 - 18637662
Alignment:
Q  221 acttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    |||||||||||||||| || |||||||||||| | |||||||| |||||| |||| |||||||    
T  18637600 acttaggtggtttgagcatgtagagagaagacatgtagattatatagttaggagattagatca 18637662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 18651034 - 18651096
Alignment:
Q  221 acttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    |||||||||||||||| || |||||||||||| | |||||||| |||||| |||| |||||||    
T  18651034 acttaggtggtttgagcatgtagagagaagacatgtagattatatagttaggagattagatca 18651096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 28542257 - 28542168
Alignment:
Q  95 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggg 185  Q
    |||||||  |||| || |||||| ||||||| | |||||||||||||||||  || ||||| ||||||||||  |||||||||||||||||    
T  28542257 aaataagtgtagcggagatgagggtgttgcgttggatgtgtggtaagactag-tgggatagaattagaaatggcaatattagagagttggg 28542168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 253
Target Start/End: Original strand, 33072853 - 33073022
Alignment:
Q  86 atgaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttg 183  Q
    ||||| || |||||||  ||||||| |||| ||||||||| | |||| |||||||||||| |  |||||||||||| ||||| |  |||  ||||||| |    
T  33072853 atgagaatcaaataagtgtagcagagatgatgatgttgcgttggatgagtggtaagactagacaagataggattaggaatgacaccattagagagagtgg 33072952  T
Q  184 gggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 253  Q
    ||||| ||||||| | ||||||  || |  ||||||| ||||| || |||| | || |||||||||||||    
T  33072953 gggtagcacctatagtagaaaagttggtagaaaataggcttagatgatttgggcatgtagagagaagacc 33073022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 43791682 - 43791624
Alignment:
Q  224 taggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatc 282  Q
    ||||||||||| | || | |||||||||||| |||||| ||||||||||||||||||||    
T  43791682 taggtggtttgggcatgtggagagaagacctgtagattctgtagttaagagagtagatc 43791624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 47796476 - 47796430
Alignment:
Q  131 tgtgtggtaagactatatgagataggattagaaatgaaaatattaga 177  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||||    
T  47796476 tgtgtggtaagactagatgggataggattagaaatgacaatattaga 47796430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 282
Target Start/End: Original strand, 35713713 - 35713794
Alignment:
Q  201 gaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatc 282  Q
    ||||||||| || ||||||| ||||||||||||| | || |||||||||||| | || ||| |||||| | |||||||||||    
T  35713713 gaaaaaatggtggaaaataggcttaggtggtttgggcatgtagagagaagacttgtacattttgtagtaaggagagtagatc 35713794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 36136756 - 36136841
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagat 260  Q
    |||||||||||||| ||||||| | |||||| ||| |  ||||||| ||||||| ||||| | |||||||||||| |||| |||||    
T  36136756 agagagttggggtagcacctatagtagaaaagatggtagaaaatagtcttaggttgtttgggcatatagagagaatacctatagat 36136841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 1740714 - 1740790
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||||||||||||| | ||||||| |||||||||  || | || |||||||||||| || |||||||||    
T  1740714 tagcagagatgaggatgttgcgttggatgtgtagtaagactaggtggggtaagattagaaatgagaacattagagag 1740790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 27021982 - 27021906
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaaga 251  Q
    |||||||||||||| ||||||| | ||||||  || |||||| ||| ||||||||||||| | || |||||||||||    
T  27021982 agagagttggggtagcacctatagtagaaaagttggtgaaaactaggcttaggtggtttgggcatgtagagagaaga 27021906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 282
Target Start/End: Complemental strand, 28628273 - 28628116
Alignment:
Q  129 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag----ttggggtaacacctatggcagaaaaaatgatgaaaaatagactt 224  Q
    ||||| ||||||||| ||| | ||| ||||||||||| | || |||||||||    |||| ||| ||||||  | |||||  ||| || ||||| | |||    
T  28628273 gatgtatggtaagaccatacgggatgggattagaaattacaacattagagagggagttggagtagcacctagagtagaaatgatggtggaaaattggctt 28628174  T
Q  225 aggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatc 282  Q
    |||||||||| | || || |||||| |||| ||||||||||||| | |||||||||||    
T  28628173 aggtggtttgggcatgtaaagagaaaacctgtagattatgtagtaaggagagtagatc 28628116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 266
Target Start/End: Complemental strand, 36102105 - 36101964
Alignment:
Q  129 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagag----agttggggtaacacctatggcagaaaaaatgatgaaaaatagactt 224  Q
    ||||||||||||||||| ||| |||  |||||||||||| || ||| |||    |||   |||| |||||||   |||||| ||| || ||||||| |||    
T  36102105 gatgtgtggtaagactagatgggatgagattagaaatgacaacatttgaggaagagtgaaggtagcacctataatagaaaagatgttggaaaataggctt 36102006  T
Q  225 aggtggtttgagtatatagagagaagacctttagattatgta 266  Q
    |||||||||| | || |||||||||||||| |||||| ||||    
T  36102005 aggtggtttggggatgtagagagaagacctatagattttgta 36101964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 253
Target Start/End: Original strand, 43281601 - 43281744
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcagaaaaaatg 209  Q
    |||||||||||||||| |||| |||||||||||| |  | |||||||||| ||||| |  |||  ||||||| |||||| ||||||| | ||||||  ||    
T  43281601 atgaggatgttgcgctggatgagtggtaagactagacaatataggattaggaatgacaccattagagagagtgggggtagcacctatagtagaaaagttg 43281700  T
Q  210 atgaaaaatagacttaggtggtttgagtatatagagagaagacc 253  Q
     |  ||||||| ||||| |||||||   || |||||||||||||    
T  43281701 gtagaaaataggcttagatggtttggacatgtagagagaagacc 43281744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 283
Target Start/End: Original strand, 45558354 - 45558462
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagag 274  Q
    |||||||||||||| ||||||| | ||||||  || |  ||| | ||||||||||||||| | |  ||||||||| |||| | |||| |||||||| |||    
T  45558354 agagagttggggtaccacctatagtagaaaagttggtagaaactcgacttaggtggtttgtgcacgtagagagaatacctgtggattctgtagttaggag 45558453  T
Q  275 agtagatca 283  Q
    |||||||||    
T  45558454 agtagatca 45558462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 35713621 - 35713672
Alignment:
Q  129 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    |||||||||||||  || ||  ||||||||||||||||||||||||||||||    
T  35713621 gatgtgtggtaaggttagatatgataggattagaaatgaaaatattagagag 35713672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 23404340 - 23404398
Alignment:
Q  109 gaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 167  Q
    ||||||||||||||||||| |||| | ||||||||||||   ||||||||||| |||||    
T  23404340 gaaatgaggatgttgcgctggatgagcggtaagactatacatgataggattaggaatga 23404398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 14593678 - 14593719
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagacta 145  Q
    ||||||| |||||||||||||| | |||||||||||||||||    
T  14593678 tagcagagatgaggatgttgcgttggatgtgtggtaagacta 14593719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 16013201 - 16013242
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagacta 145  Q
    ||||||| |||||||||||||| | |||||||||||||||||    
T  16013201 tagcagagatgaggatgttgcgttggatgtgtggtaagacta 16013242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 48202945 - 48202884
Alignment:
Q  222 cttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    ||||||||||||| | || |||||||||||| | |||||| |||||| | ||||||||||||    
T  48202945 cttaggtggtttgcgcatgtagagagaagacttgtagattctgtagtaaggagagtagatca 48202884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 35906566 - 35906490
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  35906566 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgacaccattagagag 35906490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 45836837 - 45836769
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    |||||||||||||||| |||| ||||||||| || |  |||||||||||| ||||| |  |||||||||    
T  45836837 atgaggatgttgcgctggatgagtggtaagagtagacaagataggattaggaatgacaccattagagag 45836769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 98 - 283
Target Start/End: Original strand, 17900391 - 17900580
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattaga----gagttggggtaacacc 193  Q
    ||||| |||||||||||||||||||||| | ||||||||||||||||| ||| ||||  |||||||||||  | ||||||    ||||||||||| ||||    
T  17900391 taagcgtagcagaaatgaggatgttgcgttggatgtgtggtaagactagatgggataaaattagaaatgacgacattagagacggagttggggtagcacc 17900490  T
Q  194 tatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    ||| | |||||| | | |  ||| |||||| | |||||||| | |  |||||||||||||| | |||||||||| || ||||||||||||    
T  17900491 tatagtagaaaagacggtagaaactagactcatgtggtttgggcacgtagagagaagacctgtggattatgtagataggagagtagatca 17900580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 291
Target Start/End: Original strand, 54470132 - 54470315
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaaaaa 207  Q
    |||||||||||||  | ||||||||||||||||| ||| |||| |||| ||||| | || |||    |||||||||||||| ||||||| | |||||| |    
T  54470132 atgaggatgttgcattggatgtgtggtaagactagatgggatatgatttgaaataacaacattagagagagagttggggtagcacctatagtagaaaaga 54470231  T
Q  208 tgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatcaattggaga 291  Q
    || || ||| |||||||| |||||||| | || |||||||||||| | || |||||||||| | ||||||| ||||| ||||||    
T  54470232 tggtggaaactagacttaagtggtttgggcatgtagagagaagacatgtaaattatgtagtaaggagagtaaatcaaatggaga 54470315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 282
Target Start/End: Original strand, 50662298 - 50662487
Alignment:
Q  96 aataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacc 193  Q
    ||||||| |||| || | |||||||||| |   ||||||||||||||||||||||||||||||| ||||||| |  |||  |||||||| ||| ||||||    
T  50662298 aataagcgtagcggagacgaggatgttgtgtaggatgtgtggtaagactatatgagataggattggaaatgacagcattagagagagtttgggcaacacc 50662397  T
Q  194 tatggcagaaaaaatgatgaaaaatagacttaggtgg-tttgagtatatagagagaagacctttagattatgtagttaagagagtagatc 282  Q
    ||| | |||||| ||| || ||| ||| ||||||||| |||| | || |||||||||||| | |||||| | | || | |||||||||||    
T  50662398 tatagtagaaaagatggtggaaagtaggcttaggtggttttgggcatgtagagagaagacttgtagattctattgtaaggagagtagatc 50662487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 283
Target Start/End: Original strand, 10208980 - 10209134
Alignment:
Q  129 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggt 228  Q
    ||||||||||||||||| ||| ||||| ||||||||||| || |||||||||||||||||  |||||| | |||||| |||    ||| || |||||| |    
T  10208980 gatgtgtggtaagactagatgggatagaattagaaatgacaacattagagagttggggtagaacctatagtagaaaagatggcagaaactaaacttagtt 10209079  T
Q  229 ggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    |||||| | || ||| |||||||||| |  ||| | |||| | ||||||||||||    
T  10209080 ggtttgggcatgtagcgagaagacctgtgaattttttagtaaggagagtagatca 10209134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 35555937 - 35555831
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagag 274  Q
    |||||||| ||||| ||||||| | |||||| ||| |  ||| ||||||||||||||||| | || |||||||||||||| | |||| |||||||| |||    
T  35555937 agagagttcgggtagcacctatagtagaaaagatggtagaaactagacttaggtggtttgggcatttagagagaagacctgtggattctgtagttaggag 35555838  T
Q  275 agtagat 281  Q
    |||||||    
T  35555837 agtagat 35555831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 86 - 280
Target Start/End: Original strand, 29398718 - 29398915
Alignment:
Q  86 atgaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattag----agagt 181  Q
    ||||| || |||||||  |||| || |||||||||||||  | ||| |||||||||| || |||  || |||||| |||||| ||||||||    |||||    
T  29398718 atgagaataaaataagtgtagcggagatgaggatgttgct-tggatttgtggtaagattagatggaattggattacaaatgacaatattagggaaagagt 29398816  T
Q  182 tggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtaga 280  Q
    || | || ||||||||| |||||| ||| || ||||||  |||| |||||||| | || |||||||||||||| |||||| |||||| | |||||||||    
T  29398817 tgcgatagcacctatggtagaaaagatggtggaaaatatgcttatgtggtttgggcatgtagagagaagacctatagattctgtagtgaggagagtaga 29398915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 283
Target Start/End: Original strand, 33709830 - 33710024
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactata--tga---gataggattagaaatgaaaatattagag----agttggggta 188  Q
    ||||| ||||||| |||| ||||||||| | ||||||||||||||||| |  |||   ||||||||||||||||  || |||||||    ||||||||||    
T  33709830 taagcctagcagagatgatgatgttgcgttggatgtgtggtaagactagacatgataggataggattagaaatggcaacattagagagagagttggggta 33709929  T
Q  189 acacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    |||||||| | |||||| ||| || ||| |||  |||||||||||  | || | ||||||||| || | |||| |||||| |||||||| |||||    
T  33709930 acacctatagtagaaaagatggtggaaactaggtttaggtggtttaggcatgtggagagaagaactgtggattctgtagtaaagagagtggatca 33710024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 20998954 - 20999025
Alignment:
Q  129 gatgtgtggtaagactatatgagataggattagaaatgaaaatattaga----gagttggggtaacacctat 196  Q
    ||||||| ||||||||| | ||||||||||||||||||| |||||||||    |||||||||||||||||||    
T  20998954 gatgtgttgtaagactagacgagataggattagaaatgataatattagatagggagttggggtaacacctat 20999025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 252
Target Start/End: Complemental strand, 51252799 - 51252674
Alignment:
Q  129 gatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttag 226  Q
    ||||||| ||||||||| | |||||||||||||||||||  | |||  |||||||||||||| ||||| | | |||||| ||| || ||| ||| |||||    
T  51252799 gatgtgtcgtaagactagacgagataggattagaaatgactacattagagagagttggggtagcacctctagtagaaaagatggtggaaactaggcttag 51252700  T
Q  227 gtggtttgagtatatagagagaagac 252  Q
    ||||| || | || ||||||||||||    
T  51252699 gtggtatgggcatgtagagagaagac 51252674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 31339529 - 31339637
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagag 274  Q
    ||||||||||||||  |||||||| ||||||| || |  ||| ||  ||||||||||||||| || |||||||||||| | ||||||||||||| | ||     
T  31339529 agagagttggggtagaacctatggtagaaaaa-tggtcgaaactaagcttaggtggtttgagcatgtagagagaagacttgtagattatgtagtaaggat 31339627  T
Q  275 agtagatcaa 284  Q
    ||||||||||    
T  31339628 agtagatcaa 31339637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 41192828 - 41192921
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 268  Q
    |||||||||||||| ||||||  | |||||| ||| || ||| |||||||||||| |||| | || |||||||||||||| |||||| ||||||    
T  41192828 agagagttggggtagcacctacagtagaaaagatggtggaaactagacttaggtgatttgtgcatgtagagagaagacctgtagattctgtagt 41192921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 2588906 - 2588970
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattag 176  Q
    |||||||||||||| | ||||||||||||||||| | | ||||||||||||||||| || |||||    
T  2588906 atgaggatgttgcgttggatgtgtggtaagactagaagggataggattagaaatgacaacattag 2588970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 283
Target Start/End: Original strand, 28497482 - 28497589
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagag 274  Q
    |||||||||||||| ||||| | | |||||| ||  || |||| || ||||||||||||| | || |||||||||||| | ||||||||||||| | |||    
T  28497482 agagagttggggtagcacctttagtagaaaagattgtggaaaa-aggcttaggtggtttgggcatgtagagagaagacttgtagattatgtagtaaggag 28497580  T
Q  275 agtagatca 283  Q
    |||||||||    
T  28497581 agtagatca 28497589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 253
Target Start/End: Complemental strand, 33191213 - 33191060
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggc 199  Q
    ||||||| |||||||||||||||| |||| ||||||||| || ||  ||||||||||| ||||| |  |||    ||||||| |||||| ||||||| |     
T  33191213 tagcagagatgaggatgttgcgctggatgagtggtaagattagataggataggattaggaatgacaccattagagagagagtgggggtagcacctatagt 33191114  T
Q  200 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 253  Q
    ||||||  || |  ||||||||||||| | ||||| | || |||||||||||||    
T  33191113 agaaaagttggtagaaaatagacttagattgtttgggcatgtagagagaagacc 33191060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 179
Target Start/End: Complemental strand, 20105828 - 20105761
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagaga 179  Q
    |||| ||||||||| | ||||||||||||||||| | |||||| |||||||||||| || ||||||||    
T  20105828 atgatgatgttgcgatggatgtgtggtaagactagacgagatatgattagaaatgacaacattagaga 20105761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 268
Target Start/End: Original strand, 3254082 - 3254216
Alignment:
Q  137 gtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtt 232  Q
    |||||| | ||||||||| |||||||||||||||||||    ||| ||||| |||| ||||| | | |||||| |||||| ||||||| |||||||||||    
T  3254082 gtaagaatgtatgagatatgattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaatag-cttaggtggtt 3254180  T
Q  233 tgagtatatagagagaagacctttagattatgtagt 268  Q
    ||   |||||| | |||||||| |  ||||||||||    
T  3254181 tggacatatagtgtgaagacctatgaattatgtagt 3254216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 44860771 - 44860833
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatg 166  Q
    |||||||||||||||||||| | | ||||||||||||||||| |||  ||| |||||||||||    
T  44860771 tagcagaaatgaggatgttgtgttggatgtgtggtaagactagatggaataagattagaaatg 44860833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 54934939 - 54935001
Alignment:
Q  222 cttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatcaa 284  Q
    ||||| |||||||| ||| |||||||||||| |||||||| |||||| | |||||||||||||    
T  54934939 cttagatggtttgaatatgtagagagaagacttttagattctgtagtgaggagagtagatcaa 54935001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 13805508 - 13805463
Alignment:
Q  222 cttaggtggtttgagtatatagagagaagacctttagattatgtag 267  Q
    ||||||||||||| |||| ||||||||||||||||||||| |||||    
T  13805508 cttaggtggtttgggtatgtagagagaagacctttagattttgtag 13805463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 27991789 - 27991704
Alignment:
Q  95 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    |||||||  |||||||||||| ||||||| | | |||||||||||||| || ||||||||| |||| |||| |  |||||||||||    
T  27991789 aaataagtgtagcagaaatgaagatgttgtgttggatgtgtggtaagattagatgagatagaattaaaaataacgatattagagag 27991704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 281
Target Start/End: Original strand, 30807511 - 30807688
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaa 203  Q
    ||||||||| |||||||||||| |  |||||| |||| |||| ||| ||||| ||||| |||||  | || |||||||||  ||| ||| ||| | ||||    
T  30807511 tagcagaaacgaggatgttgcgttgaatgtgtagtaaaactagatgtgatagaattaggaatgacgacataagagagttgatgtagcacatatagtagaa 30807610  T
Q  204 aaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagat 281  Q
    || ||| |  ||| || ||||||||| |||||| | ||||||||||||  | | |||| |||||||| | ||||||||    
T  30807611 aagatggtagaaactaaacttaggtgatttgagcacatagagagaagatatgttgattttgtagttaggggagtagat 30807688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 40933253 - 40933188
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattaga 177  Q
    |||||||||||||| |  |||||||||||||| |||   ||||| |||||||||||||||||||||    
T  40933253 atgaggatgttgcgttgaatgtgtggtaagacaatacatgatagaattagaaatgaaaatattaga 40933188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 49987337 - 49987479
Alignment:
Q  96 aataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattaga----gagttggggtaaca 191  Q
    ||||||| ||||||| |||||||||||| | |  |||| | ||||||||| |   ||||||||||||||||| || ||||||    ||||  |||| |||    
T  49987337 aataagcttagcagagatgaggatgttgtgttgaatgtttagtaagactagacatgataggattagaaatgacaacattagatagagagtctgggtcaca 49987436  T
Q  192 cctatggcagaaaaaatgatgaaaaatagacttaggtggtttg 234  Q
    ||||| | |||||| ||| || ||||||| |||||||||||||    
T  49987437 cctatagtagaaaagatggtggaaaataggcttaggtggtttg 49987479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 253
Target Start/End: Complemental strand, 31960179 - 31960026
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggc 199  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||    ||||||| |||||| ||||||| |     
T  31960179 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgacaccattagagagagagtgggggtagcacctatagt 31960080  T
Q  200 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 253  Q
    ||||||  || |  ||||||| ||||| ||||||| | || |||||||||||||    
T  31960079 agaaaagttggtagaaaataggcttagatggtttgggcatgtagagagaagacc 31960026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 45423544 - 45423628
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctat 196  Q
    |||||||||||| | | | ||||||||||||||| | | ||||| ||||||||||| || |||| ||||||| |||| |||||||    
T  45423544 atgaggatgttgtgttggttgtgtggtaagactagacgggatagaattagaaatgacaacattatagagttgaggtagcacctat 45423628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 45185357 - 45185306
Alignment:
Q  129 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| ||||||||| ||||||||| ||||||||||| || |||||||||    
T  45185357 gatgtgtagtaagactagatgagatagaattagaaatgacaacattagagag 45185306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 283
Target Start/End: Original strand, 47611744 - 47611827
Alignment:
Q  200 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||||||||||||||  ||||| |||| | | ||||||| ||||    
T  47611744 agaaaagatgatggaaaataggcttaggtggtttgggcatgtagagagaagacctagagattttgtaataaggagagtaaatca 47611827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 285
Target Start/End: Complemental strand, 31403391 - 31403198
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagaga--------gttggggtaa 189  Q
    ||||| ||||||| |||| ||||||| | |  ||||||||| ||| || | | ||||||||||||||||| || ||||||||        |||||||||     
T  31403391 taagcgtagcagagatgatgatgttgagttgaatgtgtggtgagattagacgggataggattagaaatgacaacattagagacagatagagttggggtag 31403292  T
Q  190 cacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatcaat 285  Q
    ||||||| | ||||||| || || ||| ||| ||||||||||| | | || || |||||| ||||  ||||||||||||  |||||||||||||||    
T  31403291 cacctatagtagaaaaa-tggtggaaactaggcttaggtggttgg-gcatgtaaagagaacacctgaagattatgtagtatagagagtagatcaat 31403198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 251
Target Start/End: Complemental strand, 39100890 - 39100749
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag--ttggggtaacacctatggcagaaaaaatg 209  Q
    |||||||||||||||   ||| |||||||||||| |   ||||||||||| ||||| |  |||||||||  | |||||| ||||||| | ||||||  ||    
T  39100890 atgaggatgttgcgccaaatgagtggtaagactagaaatgataggattaggaatgacaccattagagagagtgggggtagcacctatagaagaaaagttg 39100791  T
Q  210 atgaaaaatagacttaggtggtttgagtatatagagagaaga 251  Q
    ||  ||||||| ||||| ||||||||  || |||||||||||    
T  39100790 atagaaaataggcttagatggtttgaacatgtagagagaaga 39100749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 18499784 - 18499841
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagatag 155  Q
    |||||||||||||||||| ||||||| | | |||||||| |||||||| | |||||||    
T  18499784 taagcatagcagaaatgaagatgttgtgttggatgtgtgataagactagacgagatag 18499841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 33227126 - 33227167
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagacta 145  Q
    ||||||| |||||||||||||||| |||| ||||||||||||    
T  33227126 tagcagagatgaggatgttgcgctggatgagtggtaagacta 33227167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 12494667 - 12494743
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  12494667 tagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagag 12494743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 23906666 - 23906590
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||||||||||||| | |||| |||| ||||||| |  |||||||||||| ||||| |  |||||||||    
T  23906666 tagcagagatgaggatgttgcgttggatgagtggcaagactagacaagataggattaggaatgacaccattagagag 23906590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 25257828 - 25257792
Alignment:
Q  218 tagacttaggtggtttgagtatatagagagaagacct 254  Q
    ||||||||||||||||||| || ||||||||||||||    
T  25257828 tagacttaggtggtttgagcatgtagagagaagacct 25257792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 43070129 - 43070045
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggta 188  Q
    ||||||| ||||  |||||| | | |||||||||||||| || |   ||||||||||||||||| || |||||||||||| ||||    
T  43070129 tagcagagatgatcatgttgggttggatgtgtggtaagattagacaggataggattagaaatgacaacattagagagttgaggta 43070045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 43433835 - 43433911
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||||||||||||| | |||| |||| ||||||| |  |||||||||||| ||||| |  |||||||||    
T  43433835 tagcagagatgaggatgttgcgttggatgagtggcaagactagacaagataggattaggaatgacaccattagagag 43433911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 253
Target Start/End: Complemental strand, 48622906 - 48622755
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag--ttggggtaacacctatggcag 201  Q
    ||||||| |||||||||||||  | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||  | |||||| |||| || | ||    
T  48622906 tagcagagatgaggatgttgctttggatgagtggtaagactagacatgataggattaggaatgacaccattagagagagtgggggtagcacccatagtag 48622807  T
Q  202 aaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 253  Q
    ||||  || |  ||||||| ||||| ||||||| | || |||||||||||||    
T  48622806 aaaagttggtagaaaataggcttagatggtttgggcatgtagagagaagacc 48622755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 50680648 - 50680789
Alignment:
Q  96 aataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaaca 191  Q
    |||||| ||||| || | |||||||||| | |  |||||| | |||||||||||| |||||||| ||||| | || |||    |||||||| ||| ||||    
T  50680648 aataagtatagcggagacgaggatgttgtgttgaatgtgtagcaagactatatgacataggattggaaataacaacattagagagagagttagggcaaca 50680747  T
Q  192 cctatggcagaaaaaatgatgaaaaatagacttaggtggttt 233  Q
    ||||| |  ||||| ||| || ||||||| ||||||||||||    
T  50680748 cctatagttgaaaagatggtggaaaataggcttaggtggttt 50680789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 53518571 - 53518531
Alignment:
Q  214 aaaatagacttaggtggtttgagtatatagagagaagacct 254  Q
    ||||||| ||||||||||||| |||| ||||||||||||||    
T  53518571 aaaataggcttaggtggtttgggtatgtagagagaagacct 53518531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 56225097 - 56225133
Alignment:
Q  214 aaaatagacttaggtggtttgagtatatagagagaag 250  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  56225097 aaaataggcttaggtggtttgagtatgtagagagaag 56225133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 56375207 - 56375283
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |  ||||| |||||| ||||| |  |||||||||    
T  56375207 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaagataagattaggaatgacaccattagagag 56375283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 283
Target Start/End: Complemental strand, 39422412 - 39422225
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt---agagagttggggtaacacct 194  Q
    ||||| |||| |||||||| |||||| | | ||||||||||| || |||||||||||| ||||||||||| ||||||   |||||||||| ||||||| |    
T  39422412 taagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattagaagagagttggagtaacacat 39422313  T
Q  195 atggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    || | |||||| ||  |  ||| |||||||||||| || ||  || |||||||||||| | ||||||||||||||| |||| |||||||    
T  39422312 atagtagaaaagatagtagaaactagacttaggtgcttgga-catgtagagagaagacatgtagattatgtagttaggagaatagatca 39422225  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 261
Target Start/End: Original strand, 1661334 - 1661508
Alignment:
Q  95 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaa----aatatt----agagagttgggg 186  Q
    |||||||||||||||| |||| ||||||| | |  |||| || |||||||| ||| ||||||||||||||||||    ||||||    ||||||||||||    
T  1661334 aaataagcatagcagagatgaagatgttgtgttgaatgtctgataagactagatgtgataggattagaaatgaatgacaatatttgagagagagttgggg 1661433  T
Q  187 taacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagatt 261  Q
    || ||||||| | |||||| ||| || ||||||| || || ||||||||| || |||||||||||||| ||||||    
T  1661434 tagcacctatagtagaaaagatggtggaaaataggctcagatggtttgagcatgtagagagaagacctatagatt 1661508  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 52837528 - 52837626
Alignment:
Q  186 gtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatcaa 284  Q
    ||||||||||| | |||| ||||| || ||||||||||||||  |||||||||| |||||||||||||| |||||| |||| | | |||||||||||||    
T  52837528 gtaacacctattgtagaataaatggtggaaaatagacttagggagtttgagtatgtagagagaagacctatagattgtgtaataaggagagtagatcaa 52837626  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 283
Target Start/End: Original strand, 2544591 - 2544699
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagag 274  Q
    |||||||||||||| ||||||| | |||||| ||| || |||| ||||||||||||||||   || |||||||||||||| |||||| | |||| | |||    
T  2544591 agagagttggggtagcacctatagtagaaaagatggtggaaaacagacttaggtggtttggacatgtagagagaagacctatagattctatagtaaggag 2544690  T
Q  275 agtagatca 283  Q
    |||||||||    
T  2544691 agtagatca 2544699  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 244
Target Start/End: Original strand, 35672618 - 35672745
Alignment:
Q  117 gatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaa 216  Q
    ||||||||  || ||||||||||| |||| |||||||||||||||||||||  | || | || ||||||||| ||||||| | |||||| | ||||| ||    
T  35672618 gatgttgcatttaatgtgtggtaaaactagatgagataggattagaaatgaccacataatagtgttggggtagcacctatagtagaaaagacgatgagaa 35672717  T
Q  217 atagacttaggtggtttgagtatataga 244  Q
    ||||  |||||||||||| | |||||||    
T  35672718 atagttttaggtggtttgggcatataga 35672745  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 283
Target Start/End: Complemental strand, 35828887 - 35828732
Alignment:
Q  132 gtgtggtaagactatatgagataggattagaaatgaaaatattagagag----ttggggtaacacctatggcagaaaaaatgatgaaaaatagacttagg 227  Q
    ||||| ||||||||  || |||| |||||||||||| ||||||||||||    || | ||| ||||||||| |||||| ||| || |||||||  |||||    
T  35828887 gtgtgataagactaggtgtgataagattagaaatgacaatattagagagagagtttgagtagcacctatggtagaaaagatggtggaaaatagggttagg 35828788  T
Q  228 tggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    |||||||    | |||||||||||||| ||||||||||||| | ||||| ||||||    
T  35828787 tggtttggacgtgtagagagaagacctatagattatgtagtaaggagagaagatca 35828732  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 43423711 - 43423804
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 268  Q
    |||||||||||||||||||||| | |||||| ||| || ||| ||| |||||||||||||   || |||||||||||| | |||||||||||||    
T  43423711 agagagttggggtaacacctatagtagaaaagatggtggaaactaggcttaggtggtttggccatgtagagagaagacttgtagattatgtagt 43423804  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 283
Target Start/End: Complemental strand, 14226198 - 14226011
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacaccta 195  Q
    ||||||||||||| | |||||| ||| | | ||||||||||||| ||| |   ||||||||||||||||  || |||  |||||||||  ||| ||||||    
T  14226198 taagcatagcagatacgaggattttgtgttggatgtgtggtaaggctagacatgataggattagaaatggcaacattggagagagttgcagtagcaccta 14226099  T
Q  196 tggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    |   |||||| ||| || ||||||| ||||||||||||| | || ||||||| |  ||| |||||| |||||| | ||||||||||||    
T  14226098 tcatagaaaagatggtggaaaataggcttaggtggtttgggcatgtagagaggattcctgtagattttgtagtaaggagagtagatca 14226011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 4590879 - 4590805
Alignment:
Q  114 gaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggta 188  Q
    |||||||||||| |  ||||| ||| |||||| |  |||||||||||||||||| ||||||||||||||||||||    
T  4590879 gaggatgttgcgttgaatgtgcggtgagactagacaagataggattagaaatgacaatattagagagttggggta 4590805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 253
Target Start/End: Original strand, 9509229 - 9509388
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacc 193  Q
    ||||| ||||||| |||||||||||| | | |||| ||| |||||||| |   |||| |||||||||||| |  |||    |||||||||||||| ||||    
T  9509229 taagcgtagcagagatgaggatgttgtgttggatgagtgataagactagacaggatatgattagaaatgacaccattagagagagagttggggtagcacc 9509328  T
Q  194 tatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 253  Q
    ||| | |||||| ||| | |||||||| ||||||| ||||| | || |||||||||||||    
T  9509329 tatagtagaaaagatggtaaaaaataggcttaggtagtttgggcatgtagagagaagacc 9509388  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 12135655 - 12135747
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaa 205  Q
    |||||||||||||||| ||| ||||||||||||| | || ||||||||||||| ||  | |||||||||||||| | |||||||| | ||||||    
T  12135655 atgaggatgttgcgctggatatgtggtaagactaaacga-ataggattagaaacgacgacattagagagttgggatcacacctatagtagaaaa 12135747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 253
Target Start/End: Original strand, 39140468 - 39140590
Alignment:
Q  135 tggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtgg 230  Q
    ||||||||||| ||||||||||||||| |||||||  |||    |||||||||| ||| ||||||| | |||||| |||   |||||| | |||||||||    
T  39140468 tggtaagactagatgagataggattaggaatgaaaccattacagagagagttggcgtagcacctatagtagaaaagatggcaaaaaattggcttaggtgg 39140567  T
Q  231 tttgagtatatagagagaagacc 253  Q
    |||| | || |||||||||||||    
T  39140568 tttgggcatgtagagagaagacc 39140590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 283
Target Start/End: Complemental strand, 48431689 - 48431588
Alignment:
Q  182 tggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagat 281  Q
    ||||||| | ||||| | |||||| ||| || ||||||| ||||||||||||| | || |||||||||||| | |||||| |||||| |||||||| |||    
T  48431689 tggggtagcccctatagtagaaaagatggtggaaaataggcttaggtggtttgggcatgtagagagaagacttgtagattttgtagtaaagagagttgat 48431590  T
Q  282 ca 283  Q
    ||    
T  48431589 ca 48431588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 32404807 - 32404711
Alignment:
Q  184 gggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtaga 280  Q
    ||||||||||||| | | |||| ||| || ||||||| |||||||||||||  ||| |||||||||||||| |||||| | |||| | |||||||||    
T  32404807 gggtaacacctatagtaaaaaagatggtggaaaataggcttaggtggtttggatatgtagagagaagacctgtagattctatagtaaggagagtaga 32404711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 34792714 - 34792638
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||||||||||||||| |||| |||||||||||| |   ||||||||||| |||||||  |||||||||    
T  34792714 tagcagagatgaggatgttgcgctggatgagtggtaagactagacatgataggattaggaatgaaaccattagagag 34792638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 16822379 - 16822312
Alignment:
Q  109 gaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattag 176  Q
    ||||||||||||||| | | |||||||||||| |||| || |||||||||||||||||| | ||||||    
T  16822379 gaaatgaggatgttgtgttggatgtgtggtaatactagataagataggattagaaatgacagtattag 16822312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 6641049 - 6641181
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga--aaatattagagagttggggtaacacctatggcag 201  Q
    |||||||||||| ||||||||| | ||||||||||| ||||| |||  |||| |||||||||||  | |||  |||||||| || ||||||| || | ||    
T  6641049 tagcagaaatgatgatgttgcgttggatgtgtggtatgactagatggcatagaattagaaatgatgatataggagagagtt-ggataacaccaatagtag 6641147  T
Q  202 aaaaaatgatgaaaaatagacttaggtggtttga 235  Q
    | || |||||  ||| ||||||||||||||||||    
T  6641148 agaagatgatagaaattagacttaggtggtttga 6641181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 43375811 - 43375769
Alignment:
Q  241 tagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    |||||||||||||| ||||||||||||| ||||||||||||||    
T  43375811 tagagagaagacctatagattatgtagtaaagagagtagatca 43375769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 52442875 - 52442793
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||| ||||||| |||||||||||| | | ||||||||||||||||| |  ||||| |||||||||||| || ||| |||||    
T  52442875 taagcgtagcagacatgaggatgttgtgttggatgtgtggtaagactagacaagataagattagaaatgagaacattggagag 52442793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 4379917 - 4379998
Alignment:
Q  99 aagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    |||| |||| || |||||||||||| | | ||||||||||||||||| |  ||||| |||||||||||| || |||||||||    
T  4379917 aagcttagctgagatgaggatgttgtgttggatgtgtggtaagactagaaaagatatgattagaaatgacaacattagagag 4379998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 232
Target Start/End: Complemental strand, 9599765 - 9599627
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacc 193  Q
    ||||| ||||||| |||||||||||| | | |||| |||||||||||| | | |||| |||||| ||||| |  |||    |||||||||| ||||||||    
T  9599765 taagcgtagcagagatgaggatgttgtgttggatgagtggtaagactagacgggatatgattaggaatgacatcattagagagagagttggagtaacacc 9599666  T
Q  194 tatggcagaaaaaatgatgaaaaatagacttaggtggtt 232  Q
    ||| | |||||| ||| |  ||||||| |||||||||||    
T  9599665 tatagtagaaaagatggtagaaaataggcttaggtggtt 9599627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 253
Target Start/End: Original strand, 1210662 - 1210815
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggc 199  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||    ||||||| |||||| ||||||| |     
T  1210662 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgacaccattagagagagagtgggggtagcacctatagt 1210761  T
Q  200 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 253  Q
    ||||||  || |  ||||||| ||||| ||||||| | || |||||||||||||    
T  1210762 agaaaagttggtagaaaataggcttagatggtttgggcatgtagagagaagacc 1210815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 283
Target Start/End: Complemental strand, 3819146 - 3819038
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagag 274  Q
    ||||||||| |||| ||||||||| |||||| ||| ||  || |||||||| |||||||| | || |||| ||||||| | | |||| | |||| |||||    
T  3819146 agagagttgaggtagcacctatggtagaaaagatggtggtaactagacttaagtggtttgggcatgtagaaagaagacttgtggattctctagtaaagag 3819047  T
Q  275 agtagatca 283  Q
    |||||||||    
T  3819046 agtagatca 3819038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 283
Target Start/End: Original strand, 40416363 - 40416471
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagag 274  Q
    |||||||||| ||| ||||||| | |||||| ||| || |||  || ||||||||||||  | || ||||||||||| || |||||| |||||| | |||    
T  40416363 agagagttggagtagcacctatagtagaaaagatggtggaaacgaggcttaggtggtttaggcatgtagagagaagaactgtagattttgtagtaaggag 40416462  T
Q  275 agtagatca 283  Q
    |||||||||    
T  40416463 agtagatca 40416471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 40419556 - 40419632
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| ||||||||| |||| |  |||| |||||| |||| ||||||||| ||||||||||| || |||||||||    
T  40419556 tagcagagatgaggatggtgcgttgaatgtatggtaaaactagatgagatagaattagaaatgacaacattagagag 40419632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 40920894 - 40920826
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    |||| ||||||||  | |||||||||||||| || | ||||||||||||||||| | ||||||||||||    
T  40920894 atgaagatgttgcattggatgtgtggtaagattagacgagataggattagaaattacaatattagagag 40920826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 26016348 - 26016395
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagacta 145  Q
    ||||| ||||||| |||||||||||||| | |||||||||||||||||    
T  26016348 taagcgtagcagagatgaggatgttgcgttggatgtgtggtaagacta 26016395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 26016429 - 26016508
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacct 254  Q
    ||||||||||||||||||||||   |||||| ||| |  ||| |||| |||||||||||| |||| |||| |||||||||    
T  26016429 agagagttggggtaacacctatatgagaaaagatggtagaaactagatttaggtggtttgggtatgtagaaagaagacct 26016508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 252
Target Start/End: Complemental strand, 32231311 - 32231167
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaaaaa 207  Q
    |||||||||||||||| |||| ||||||||| || |   ||||||||||| ||||| |  |||    ||||||| |||||| ||||||| | |||||||     
T  32231311 atgaggatgttgcgctagatgagtggtaagattagacatgataggattaggaatgacaccattagagagagagtgggggtagcacctatagtagaaaaat 32231212  T
Q  208 tgatgaaaaatagacttaggtggtttgagtatatagagagaagac 252  Q
    || |  ||||||| ||||| ||||||| | || ||||||||||||    
T  32231211 tggtagaaaataggcttagatggtttgggcatgtagagagaagac 32231167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 290
Target Start/End: Complemental strand, 43240669 - 43240554
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagag 274  Q
    ||||||| |||||| ||||||| | ||||||| ||||  ||||||| ||||| | ||||||| || |||||||||||||  |||||  ||| || |  ||    
T  43240669 agagagtgggggtagcacctatagtagaaaaattgatagaaaataggcttagatagtttgagcatgtagagagaagacccgtagatgttgtggtaagaag 43240570  T
Q  275 agtagatcaattggag 290  Q
    |||||||||| |||||    
T  43240569 agtagatcaaatggag 43240554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 251
Target Start/End: Original strand, 8671837 - 8671986
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcag 201  Q
    ||||||| || ||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||  ||||||| |||||| ||||||| | ||    
T  8671837 tagcagagataaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagagagtgggggtagcacctatagtag 8671936  T
Q  202 aaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaaga 251  Q
    ||||  || |  ||||||| ||||| ||||||| | || |||||||||||    
T  8671937 aaaagttggtagaaaataggcttagatggtttgggcatgtagagagaaga 8671986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 290
Target Start/End: Original strand, 15085859 - 15086041
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaaaaa 207  Q
    |||||||||||||||| || | |||||||||||| ||  ||||||||||| ||||| |  |||    ||||||| |||||| ||||||| | ||||||      
T  15085859 atgaggatgttgcgctggacgagtggtaagactagataggataggattaggaatgacaccattagagagagagtgggggtagcacctatagtagaaaagt 15085958  T
Q  208 tgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatcaattggag 290  Q
    || |  ||||||| ||||| |||||||   || |||||||||||||  |||||   || ||||  |||||||||||| |||||    
T  15085959 tggtagaaaataggcttagatggtttggacatgtagagagaagacccgtagatgccgttgttagaagagtagatcaaatggag 15086041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 16273171 - 16273122
Alignment:
Q  118 atgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 167  Q
    |||||||| | ||||||||||||||||| |||||||  ||||||||||||    
T  16273171 atgttgcgttggatgtgtggtaagactagatgagatgagattagaaatga 16273122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 19936421 - 19936502
Alignment:
Q  86 atgaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 167  Q
    ||||| || ||||||||||||| || ||||| |||||| | | |||| |||||||||||| ||| ||||||| ||| |||||    
T  19936421 atgagaatcaaataagcatagcggagatgagaatgttgtgttggatgagtggtaagactagatgggataggaataggaatga 19936502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 696194 - 696262
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    |||||||||||||||| |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  696194 atgaggatgttgcgctggatgagtggtaagactagacaggataggattaggaatgacaccattagagag 696262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 4001812 - 4001744
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    |||||||||||||||| |||| |||||||||||| |  | |||||||||| ||||| |  |||||||||    
T  4001812 atgaggatgttgcgctagatgagtggtaagactagacaaaataggattaggaatgacaccattagagag 4001744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 9592651 - 9592727
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  9592651 tagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagag 9592727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 290
Target Start/End: Original strand, 29807901 - 29807973
Alignment:
Q  218 tagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatcaattggag 290  Q
    |||||||| ||| |||| | || |||||||||||| | | ||||||||||| |||||||||||| || |||||    
T  29807901 tagacttacgtgatttgggcatgtagagagaagacatgtggattatgtagtaaagagagtagattaaatggag 29807973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 30202495 - 30202419
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  30202495 tagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagag 30202419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 277
Target Start/End: Original strand, 39525775 - 39525875
Alignment:
Q  177 agagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagag 276  Q
    |||||||||||| ||||||| | |||||| ||||||| || | |  |||||||||||||  || |||| ||||||| |||| ||||| |||| | |||||    
T  39525775 agagttggggtagcacctattgtagaaaagatgatgagaacttggtttaggtggtttgaacatgtagacagaagacatttaaattatctagtaaggagag 39525874  T
Q  277 t 277  Q
    |    
T  39525875 t 39525875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 253
Target Start/End: Complemental strand, 51441130 - 51440977
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggc 199  Q
    ||||||| |||||||||||||  | || | |||||||||||| |   ||||||||||| ||||| |  |||    ||||||| |||||||||||||| |     
T  51441130 tagcagagatgaggatgttgcattggacgagtggtaagactagacatgataggattaggaatgacaccattagagagagagtgggggtaacacctatagt 51441031  T
Q  200 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 253  Q
    ||||||  || |  ||||||| ||||| ||||||| | || |||||||||||||    
T  51441030 agaaaagttggtagaaaataggcttagatggtttgggcatgtagagagaagacc 51440977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 100 - 234
Target Start/End: Complemental strand, 11002790 - 11002654
Alignment:
Q  100 agcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatg 197  Q
    ||||||||||| |||||||||||||||| ||||||||||||||| | ||| ||||| ||||||||||| || |||  |||||||| ||||| ||||||      
T  11002790 agcatagcagagatgaggatgttgcgctggatgtgtggtaagacgagatgggatagaattagaaatgacaacattagagagagttcgggtagcacctaca 11002691  T
Q  198 gcagaaaaaatgatgaaaaatagacttaggtggtttg 234  Q
    | |||||| ||| |  ||| |||||||||||||||||    
T  11002690 gtagaaaacatggtagaaactagacttaggtggtttg 11002654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 283
Target Start/End: Original strand, 9235011 - 9235164
Alignment:
Q  129 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggt 228  Q
    ||||||||||||||||| | | |||||||||| |||||| || ||||||||||||| | | || |||| | ||||||| ||| || || | |||||||||    
T  9235011 gatgtgtggtaagactagacgggataggattataaatgacaacattagagagttggagaagcatctatagtagaaaaa-tgacgagaactcgacttaggt 9235109  T
Q  229 ggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    | |||||| || |||||||||||| | |||||| |||||| | ||||||||||||    
T  9235110 gttttgagcatgtagagagaagacttgtagattctgtagtaacgagagtagatca 9235164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 281
Target Start/End: Complemental strand, 10083109 - 10082923
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag----ttggggtaacacc 193  Q
    ||||| ||||||  |||||||||||||  ||||||||||||||||||| | | ||||| ||||||||||| || ||||| |||    |||||||| ||||    
T  10083109 taagcgtagcagggatgaggatgttgct-ttgatgtgtggtaagactagacgggatagaattagaaatgagaacattagggagagcattggggtatcacc 10083011  T
Q  194 tatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagat 281  Q
    ||| | |||||| ||| |  ||| |||||||| |||||||  | || |||||||||||| | | |||| |||||| ||||||||||||    
T  10083010 tatagtagaaaagatggtagaaactagacttaagtggtttcggcatgtagagagaagacttgtggattctgtagtaaagagagtagat 10082923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 280
Target Start/End: Original strand, 37124497 - 37124664
Alignment:
Q  115 aggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatta--gagagttggggtaacacctatggcagaaaaaatgatg 212  Q
    ||||||||||| ||| ||||| | ||||||| |||| ||   |||||||||||||| ||||  |||||| |||||| ||||||| |  ||||| ||||||    
T  37124497 aggatgttgcgtttggtgtgttgaaagactagatgaaatcatattagaaatgaaaaaattaaagagagtcggggtagcacctatagttgaaaagatgatg 37124596  T
Q  213 aaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtaga 280  Q
     ||||||| |||| ||  ||||||| | | |||||||||||| || |||||||||| | |||||||||    
T  37124597 gaaaataggcttaagtcatttgagtttgttgagagaagacctatatattatgtagtaaggagagtaga 37124664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 281
Target Start/End: Original strand, 30588381 - 30588547
Alignment:
Q  115 aggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaa 214  Q
    |||||||||||   ||||||||||||||  | |||||||| |||||||||||| |||||||||||||| | ||||||  |||   |||||| ||| || |    
T  30588381 aggatgttgcgtgggatgtgtggtaagatcaaatgagatatgattagaaatgacaatattagagagttagagtaacatgtataatagaaaagatggtgga 30588480  T
Q  215 aaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagat 281  Q
    ||||||  ||| |||||||| | ||||   |||||||| | |||||| |||||| | ||||||||||    
T  30588481 aaataggtttaagtggtttgggcatattcggagaagacttgtagattctgtagtaaggagagtagat 30588547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 684032 - 683981
Alignment:
Q  129 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  684032 gatgtgtggtaagactagatgagatagaattagaaatgacaatattagagag 683981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 265
Target Start/End: Original strand, 6888935 - 6889075
Alignment:
Q  129 gatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagactt 224  Q
    ||||||||||||||||| |||||||| |||||||||||| ||||||    | |||||||||||| ||| ||| |  ||||| ||| || ||||||| |||    
T  6888935 gatgtgtggtaagactagatgagatatgattagaaatgacaatattacagaaagagttggggtagcacgtatagaggaaaagatggtggaaaataggctt 6889034  T
Q  225 aggtggtttgagtatatagagagaagacctttagattatgt 265  Q
    | ||||||||   || |||||||||||| | | ||||||||    
T  6889035 aagtggtttggacatgtagagagaagacttgtggattatgt 6889075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 254
Target Start/End: Complemental strand, 41833907 - 41833793
Alignment:
Q  142 actatatgagataggattagaaatgaaaatattagagagttggggtaacacctatgg--cagaaaaaatgatgaaaaatagacttaggtggtttgagtat 239  Q
    |||||||| ||||||||||| ||||  |||||||||||||||||||| |||||||||   |||||| ||| || || |||  ||||||||||||| | ||    
T  41833907 actatatgggataggattaggaatgttaatattagagagttggggtagcacctatggtatagaaaagatggtggaacatatgcttaggtggtttgggcat 41833808  T
Q  240 atagagagaagacct 254  Q
     |||||| |||||||    
T  41833807 gtagagacaagacct 41833793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 264
Target Start/End: Original strand, 33667188 - 33667297
Alignment:
Q  157 attagaaatgaaaatatta--gagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacct 254  Q
    ||||||||||| || ||||  ||||||||||||| ||||||| | |||||| ||| |  ||| ||||||||||||||||| | || ||||||||||||||    
T  33667188 attagaaatgacaacattaacgagagttggggtagcacctatagtagaaaagatggtagaaactagacttaggtggtttgggcatgtagagagaagacct 33667287  T
Q  255 ttagattatg 264  Q
     | |||||||    
T  33667288 gtggattatg 33667297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 14667699 - 14667814
Alignment:
Q  129 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagag----------agttggggtaacacctatggcagaaaaaatgatgaaaaat 218  Q
    |||||||| |||||||| ||||| ||| ||||||||||| ||||||||||          |||||||||| ||||||| | |||||| ||| || |||||    
T  14667699 gatgtgtgataagactagatgaggtagaattagaaatgacaatattagagagagagagagagttggggtagcacctatagtagaaaagatggtggaaaat 14667798  T
Q  219 agacttaggtggtttg 234  Q
    ||||||||||||||||    
T  14667799 agacttaggtggtttg 14667814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 290
Target Start/End: Original strand, 79505 - 79620
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagag 274  Q
    ||||||||||||||  |||||| | |||||| ||| || |||| | | ||||||||||||   || |||||||||||||| |||||| |||||| | |||    
T  79505 agagagttggggtagtacctatagtagaaaagatggtggaaaacataattaggtggtttggacatgtagagagaagacctatagattctgtagtaaggag 79604  T
Q  275 agtagatcaattggag 290  Q
    ||| |||||| |||||    
T  79605 agtcgatcaaatggag 79620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 283
Target Start/End: Complemental strand, 7359593 - 7359442
Alignment:
Q  135 tggtaagactatatgagataggattagaaatgaaaatattagagag----ttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtgg 230  Q
    ||||||||||  | ||||||| ||||||||||| ||| ||||||||    ||  |||||||||||| | |||||| ||| || |||||||  ||||||||    
T  7359593 tggtaagactggacgagatagaattagaaatgacaatgttagagagagagttcaggtaacacctatagtagaaaatatggtggaaaataggtttaggtgg 7359494  T
Q  231 tttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    |||| | || |||||||||||  | |||||| |||||| | ||||||||||||    
T  7359493 tttg-gcatgtagagagaagatatgtagattctgtagtaaggagagtagatca 7359442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 283
Target Start/End: Original strand, 14749267 - 14749407
Alignment:
Q  147 atgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatata 242  Q
    |||||||||||||||||||||||| |||    |||||||||| ||| ||||||| | ||||||| || |  ||| ||||||||| |||||||   || ||    
T  14749267 atgagataggattagaaatgaaaacattagagagagagttggtgtagcacctatagtagaaaaattggtagaaactagacttagatggtttggacatgta 14749366  T
Q  243 gagagaagacctttagattatgtagttaagagagtagatca 283  Q
    |||||||||||| | |||| ||| || | |||||| |||||    
T  14749367 gagagaagacctgtggattctgttgtaaggagagtcgatca 14749407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 21093701 - 21093768
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagaga 179  Q
    |||||||||||||| |  |||||||||||||||| ||| ||| | ||||||||||| |||||||||||    
T  21093701 atgaggatgttgcgttgtatgtgtggtaagactagatgtgatggaattagaaatgacaatattagaga 21093768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 265
Target Start/End: Original strand, 28676562 - 28676677
Alignment:
Q  150 agataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaa 249  Q
    ||||| |||||||||| | || | || |||||| ||||| || |||| | |||||| ||| || ||||||| ||||||||||||  | || |||||||||    
T  28676562 agatatgattagaaataacaacaatatagagttcgggtagcagctatagtagaaaagatggtggaaaatagtcttaggtggtttcggcatgtagagagaa 28676661  T
Q  250 gacctttagattatgt 265  Q
    |||||||| |||||||    
T  28676662 gacctttaaattatgt 28676677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 283
Target Start/End: Original strand, 42199303 - 42199386
Alignment:
Q  200 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    |||||| ||| || ||| ||||||||||||||||| | || |||||||||||| | |||||| |||||| | ||||||||||||    
T  42199303 agaaaagatggtggaaactagacttaggtggtttgggcatgtagagagaagacatgtagattctgtagtaaggagagtagatca 42199386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 251
Target Start/End: Original strand, 1275176 - 1275332
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag---ttggggtaacacct 194  Q
    ||||||||||||| |||||||||||||| | |||| |||||||||||| |   | ||||||||| ||||| |  |||||||||    ||||||| |||||    
T  1275176 taagcatagcagagatgaggatgttgcgttggatgagtggtaagactagacatggtaggattaggaatgacaccattagagagagagtggggtagcacct 1275275  T
Q  195 atggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaaga 251  Q
    || | ||||||  || |  ||||||| ||||| ||||||| | || |||||||||||    
T  1275276 atagtagaaaagttggtagaaaataggcttagatggtttgggcatgtagagagaaga 1275332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 16134550 - 16134481
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 167  Q
    |||| |||||| |||||||||||||| | | ||||| ||||||||||| ||||||||  |||||||||||    
T  16134550 taagtatagcataaatgaggatgttgtgttggatgtatggtaagactagatgagataaaattagaaatga 16134481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 283
Target Start/End: Original strand, 43475247 - 43475340
Alignment:
Q  190 cacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    ||||||| | |||||| ||| || ||| ||| ||||||||||||| ||||  ||||||||||||| |||||  |||||| | ||||||||||||    
T  43475247 cacctatagtagaaaagatggtggaaactaggcttaggtggtttgggtattcagagagaagacctgtagatgttgtagtaaggagagtagatca 43475340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 2075839 - 2075763
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||||||||||||| | |||| || ||||||||| |  |||||||||||| ||||| || |||||||||    
T  2075839 tagcagagatgaggatgttgcgttggatgagttgtaagactagacaagataggattaggaatgacaacattagagag 2075763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 6368283 - 6368227
Alignment:
Q  111 aatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 167  Q
    ||||||||||||||| | |||||||||||||| || | ||||||| |||||||||||    
T  6368283 aatgaggatgttgcgttagatgtgtggtaagaatagacgagatagaattagaaatga 6368227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 27998329 - 27998381
Alignment:
Q  93 tgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagacta 145  Q
    |||| |||||||| |||| |||||||||||||| | |||||||||||||||||    
T  27998329 tgaattaagcatatcagagatgaggatgttgcgttggatgtgtggtaagacta 27998381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 233
Target Start/End: Original strand, 32516483 - 32516606
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag--ttggggtaacacctatggcagaaaaaatg 209  Q
    |||| ||||||| | | ||||||||||||||||| |   |||||  |||||||||| || |||||||||  |||| ||||||| ||| | |||||| |||    
T  32516483 atgatgatgttgtgttggatgtgtggtaagactagacaggatagacttagaaatgacaacattagagagagttggagtaacacttatagtagaaaagatg 32516582  T
Q  210 atgaaaaatagacttaggtggttt 233  Q
     || ||||||| ||||||||||||    
T  32516583 gtggaaaataggcttaggtggttt 32516606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 27887 - 27946
Alignment:
Q  177 agagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgag 236  Q
    |||||| ||||| ||||||| | |||||| |||||| ||||||| |||||||||||||||    
T  27887 agagttagggtagcacctatagtagaaaagatgatggaaaataggcttaggtggtttgag 27946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 21952276 - 21952331
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 167  Q
    |||||||||||||| |  |||||||||||||||| | |||||| ||||||||||||    
T  21952276 atgaggatgttgcgttgcatgtgtggtaagactagacgagataagattagaaatga 21952331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 253
Target Start/End: Complemental strand, 31636254 - 31636132
Alignment:
Q  133 tgtggtaagactatatgagataggattagaaatgaaaatattagaga--gttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtgg 230  Q
    ||||||||||||| |   ||||| |||| |||||| |  ||||||||  ||||||||| ||||||| | |||||| ||| |  ||| |||||||||||||    
T  31636254 tgtggtaagactagactggatagaattataaatgacagcattagagaaagttggggtagcacctatagtagaaaagatggtagaaactagacttaggtgg 31636155  T
Q  231 tttgagtatatagagagaagacc 253  Q
    |||| | || |||||||||||||    
T  31636154 tttgggcatgtagagagaagacc 31636132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 7678405 - 7678471
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagag 178  Q
    |||||||||||||| | ||| ||||| ||||||| ||  ||||||||||||||||| || |||||||    
T  7678405 atgaggatgttgcgttggatctgtggcaagactagataggataggattagaaatgacaacattagag 7678471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 284
Target Start/End: Complemental strand, 18351194 - 18351088
Alignment:
Q  179 agttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtata-tagagagaagacctttagattatgtagttaagagagt 277  Q
    |||||||||| ||||||| | |||||| ||| |  ||| ||| ||||||||||||| | ||  |||||||||||||| ||||||||| | | | ||||||    
T  18351194 agttggggtagcacctatagtagaaaatatggtagaaactaggcttaggtggtttgggcattgtagagagaagacctgtagattatgcaataaggagagt 18351095  T
Q  278 agatcaa 284  Q
    |||||||    
T  18351094 agatcaa 18351088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 5305524 - 5305609
Alignment:
Q  95 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||||| | | | |||||||||| | ||||||||||||||||| |  |||||| ||||||||| | || |||||||||    
T  5305524 aaataagaatagcaaagacggggatgttgcgttggatgtgtggtaagactagacaagatagaattagaaataacaacattagagag 5305609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 28187042 - 28186957
Alignment:
Q  95 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||||| | |||| ||||| |||||||  | ||||||||||||||||| |   | ||||||||||||||| || |||||||||    
T  28187042 aaataagcacatcagagatgagaatgttgcattggatgtgtggtaagactagacatggtaggattagaaatgacaacattagagag 28186957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 29938132 - 29938193
Alignment:
Q  200 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagatt 261  Q
    |||||| ||| || ||||||| |||||||||||| ||  |||||||||||||||| ||||||    
T  29938132 agaaaagatggtggaaaataggcttaggtggtttaagcctatagagagaagacctgtagatt 29938193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 38341760 - 38341723
Alignment:
Q  130 atgtgtggtaagactatatgagataggattagaaatga 167  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  38341760 atgtgtggtaagactatacgagataggtttagaaatga 38341723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 41110115 - 41110030
Alignment:
Q  95 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    |||||||| ||||| | ||||  |||||||||| ||||||| || |||||| |||  |||||||||||||||| || | |||||||    
T  41110115 aaataagcgtagcaaagatgaaaatgttgcgctggatgtgtagtgagactagatggaataggattagaaatgacaacactagagag 41110030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 1287954 - 1287878
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  1287954 tagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacatcattagagag 1287878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 24178427 - 24178483
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggatta 160  Q
    ||||||| |||||||||||||| | |||| ||||||||||||||   ||||||||||    
T  24178427 tagcagagatgaggatgttgcgttggatgagtggtaagactatacatgataggatta 24178483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 34194850 - 34194767
Alignment:
Q  115 aggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctat 196  Q
    ||||||||| | | |||||||||||| |||| |   |||||||||||||||| ||| |||  ||||||||||| ||||||||||    
T  34194850 aggatgttgtgttggatgtgtggtaaaactagacaggataggattagaaatgtaaacattagagagagttgggataacacctat 34194767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 280
Target Start/End: Complemental strand, 44245 - 44053
Alignment:
Q  95 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaat-------attagagagttggggt 187  Q
    ||||||||  ||| || |||||||||||||| | |||||| |||||||||| |||  |||| |||| |||||| |||       ||||||||||||||||    
T  44245 aaataagcgcagcggagatgaggatgttgcgttggatgtgcggtaagactagatggtatagtattaaaaatgacaattgacaatattagagagttggggt 44146  T
Q  188 aacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtaga 280  Q
    | ||||||| | |||||| |||  | ||||||| ||||||||||||| | || ||||||||||||||| ||||| | |||| | |||||||||    
T  44145 agcacctatagtagaaaagatggcggaaaataggcttaggtggtttgggcatgtagagagaagaccttcagattctctagtaaggagagtaga 44053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 9579053 - 9578914
Alignment:
Q  117 gatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag--ttggggtaacacctatggcagaaaaaatgatgaa 214  Q
    ||||||||| | |||||||||||||| || ||  ||||| |||| |||||| ||| ||||||||  ||||||| |||| ||| | || ||| |||||| |    
T  9579053 gatgttgcgttggatgtgtggtaagaatagatatgatagaattaaaaatgacaatgttagagagagttggggtgacacatatagtagtaaagatgatgta 9578954  T
Q  215 aaatagacttaggtggtttgagtatatagagagaagacct 254  Q
    ||||||||||||||||||||   || ||||||||||||||    
T  9578953 aaatagacttaggtggtttggacatgtagagagaagacct 9578914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 281
Target Start/End: Original strand, 7825269 - 7825458
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagaga------gttggggtaaca 191  Q
    ||||| ||||||| || ||||||||||| | ||||||||||||||||| |   |||| |||||||||||| | |||||||||      ||||| ||| ||    
T  7825269 taagcgtagcagagattaggatgttgcgttggatgtgtggtaagactagactggatatgattagaaatgacactattagagagagagtgttggagtagca 7825368  T
Q  192 cctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagat 281  Q
    ||||| |  | ||| ||| |||||||||  ||||| ||||||||| || |||||||||||| | |||||| | |||| | ||||||||||    
T  7825369 cctatagttgtaaatatggtgaaaaataagcttagttggtttgagcatgtagagagaagacatgtagattctatagtcaggagagtagat 7825458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 9647970 - 9647888
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttgggg 186  Q
    ||||||| |||||||||||||| | ||||||||||||||||| ||| |||| |||||||||||  || |||| ||||||||||    
T  9647970 tagcagagatgaggatgttgcgttggatgtgtggtaagactagatgtgataagattagaaatgtcaacattatagagttgggg 9647888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 290
Target Start/End: Original strand, 11017268 - 11017421
Alignment:
Q  139 aagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgag 236  Q
    ||||||| |||||||| |||||| ||||||||||||  ||||||||| |||| ||||||| | |||||| ||  || ||| | | |||| |||||||| |    
T  11017268 aagactagatgagataagattaggaatgaaaatattaaagagagttgaggtagcacctatagtagaaaagatcgtggaaactcggcttaagtggtttggg 11017367  T
Q  237 tatatagagagaagacctttagattatgtagttaagagagtagatcaattggag 290  Q
    ||| | |||||||||||  |||||| ||||||||  || ||||||||| |||||    
T  11017368 tatgtggagagaagacccgtagattttgtagttagaagggtagatcaaatggag 11017421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 45077656 - 45077727
Alignment:
Q  95 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatg 166  Q
    ||||||||||||| || |||||||||||||| | ||||||||||||||||| |  |||||| ||||||||||    
T  45077656 aaataagcatagctgagatgaggatgttgcgttggatgtgtggtaagactagactagatagaattagaaatg 45077727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 252
Target Start/End: Complemental strand, 9556724 - 9556582
Alignment:
Q  113 tgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagag----agttggggtaacacctatggcagaaaaaat 208  Q
    ||||||||||| | | |||||||||||||| || | | |||| |||||||||||| || |||||||    |||||||||||||| ||| | || ||||||    
T  9556724 tgaggatgttgtgttggatgtgtggtaagattagacgggatatgattagaaatgacaacattagagagaaagttggggtaacacttatagtag-aaaaat 9556626  T
Q  209 gatgaaaaatagacttaggtggtttgagtatatagagagaagac 252  Q
    | || ||||||| ||||||||||||  | || ||||||||||||    
T  9556625 ggtggaaaataggcttaggtggtttaggcatgtagagagaagac 9556582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 283
Target Start/End: Original strand, 11412713 - 11412819
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagag 274  Q
    |||||||||||||| ||||||| | |||||| ||| || ||||||| ||||||| ||||| | || |||||| |||| || |||||| ||||||  ||||    
T  11412713 agagagttggggtagcacctatagtagaaaatatggtggaaaataggcttaggttgtttgggcatttagagataagaactgtagattctgtagt--agag 11412810  T
Q  275 agtagatca 283  Q
    |||||||||    
T  11412811 agtagatca 11412819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 12734626 - 12734750
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcagaaaaaatg 209  Q
    |||||||||||| ||| |||| |||||||||||| | | ||||||||||||||||| |  |||  ||||||| |||||| ||||||| | ||||||| ||    
T  12734626 atgaggatgttgtgctggatgagtggtaagactagacgggataggattagaaatgacaccattagagagagtgggggtagcacctatagtagaaaaattg 12734725  T
Q  210 atgaaaaatagacttaggtggtttg 234  Q
     |  ||||||| ||||| |||||||    
T  12734726 gtagaaaataggcttagatggtttg 12734750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 284
Target Start/End: Complemental strand, 23714629 - 23714442
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattag--agagttggggtaacaccta 195  Q
    ||||||||||||| || || |||||| | | ||||||||||||||||| |  | ||||||||| ||||||  | |||||  |||||| ||||| ||| ||    
T  23714629 taagcatagcagagattagaatgttgtgttggatgtgtggtaagactagacaaaataggattaaaaatgacgacattagatagagtt-gggtagcacata 23714531  T
Q  196 tggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatcaa 284  Q
    | | |||||| ||| || ||| |||||||| || ||||  | || |||||||||||| | | ||||||||||| | |||||||||||||    
T  23714530 tagtagaaaagatggtggaaactagacttatgtagtttaggcatgtagagagaagacttgtggattatgtagtaaggagagtagatcaa 23714442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 284
Target Start/End: Complemental strand, 24102301 - 24102114
Alignment:
Q  98 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattag--agagttggggtaacaccta 195  Q
    ||||||||||||| || || |||||| | | ||||||||||||||||| |  | ||||||||| ||||||  | |||||  |||||| ||||| ||| ||    
T  24102301 taagcatagcagagattagaatgttgtgttggatgtgtggtaagactagacaaaataggattaaaaatgacgacattagatagagtt-gggtagcacata 24102203  T
Q  196 tggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatcaa 284  Q
    | | |||||| ||| || ||| |||||||| || ||||  | || |||||||||||| | | ||||||||||| | |||||||||||||    
T  24102202 tagtagaaaagatggtggaaactagacttatgtagtttaggcatgtagagagaagacttgtggattatgtagtaaggagagtagatcaa 24102114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 260
Target Start/End: Original strand, 40759024 - 40759177
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag-----ttggggtaacacctatggcagaaaaa 206  Q
    ||||||||||| | || ||||||  ||||||||| |  ||||| |||||||||||| || |||||||||     ||||| || ||| ||| | |||||||    
T  40759024 atgaggatgtttcactagatgtggtgtaagactagacaagataagattagaaatgacaacattagagagagaggttgggttagcacttatagtagaaaaa 40759123  T
Q  207 atgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagat 260  Q
    ||| || ||| |||| |||||||||||| | || |||||||||||| |||||||    
T  40759124 atggtggaaactagagttaggtggtttgtgcatgtagagagaagacttttagat 40759177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 260
Target Start/End: Complemental strand, 41763398 - 41763247
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag---ttggggtaacacctatggcagaaaaaat 208  Q
    |||||||||||||| | |||| |||||||||||| |  |||||||||||| ||||| |  |||||||||    ||||||||||||||| | ||||||  |    
T  41763398 atgaggatgttgcgatggatgagtggtaagactagacaagataggattaggaatgacaccattagagagagagtggggtaacacctatagtagaaaagtt 41763299  T
Q  209 gatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagat 260  Q
    | |  ||||||| |||||||||||||   ||  ||||||||||||| |||||    
T  41763298 ggtagaaaataggcttaggtggtttggacatgcagagagaagacctgtagat 41763247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 249
Target Start/End: Original strand, 41330062 - 41330195
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgat 211  Q
    |||| ||||||| | | |||||||||||| ||||| |  |||| |||||||||| ||    ||||||||||| |||||||||| | | |||||| |||||    
T  41330062 atgatgatgttgtgttggatgtgtggtaaaactatgtaggatatgattagaaataaa----ttagagagttgaggtaacacctttagtagaaaagatgat 41330157  T
Q  212 gaaaaatagacttaggtggtttgagtatatagagagaa 249  Q
     |||||||| ||||| ||||||||  || |||||||||    
T  41330158 caaaaataggcttagatggtttgaacatgtagagagaa 41330195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 283
Target Start/End: Complemental strand, 43752237 - 43752129
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagag 274  Q
    |||||||||||||| ||||||| | ||||||  || |  ||||||| |||||||| ||||   || |||||||||||||| |||||||||||||   |||    
T  43752237 agagagttggggtagcacctatagtagaaaaggtggtagaaaataggcttaggtgatttggacatgtagagagaagacctatagattatgtagtagggag 43752138  T
Q  275 agtagatca 283  Q
    |||||||||    
T  43752137 agtagatca 43752129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 233
Target Start/End: Original strand, 44411650 - 44411762
Alignment:
Q  121 ttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatag 220  Q
    ||||| ||||||||| ||||||||| |||||||| ||||| |||||| || ||||||||||||  ||| ||||||| | || ||| ||| || |||||||    
T  44411650 ttgcgtttgatgtgttgtaagactagatgagatatgattacaaatgacaacattagagagttgaagtagcacctatagtaggaaagatggtggaaaatag 44411749  T
Q  221 acttaggtggttt 233  Q
     |||  |||||||    
T  44411750 gcttccgtggttt 44411762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 37393502 - 37393455
Alignment:
Q  133 tgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||||||||| |||||||| ||| |||||||||||||||||||||    
T  37393502 tgtggtaagactagatgagatatgatcagaaatgaaaatattagagag 37393455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 283
Target Start/End: Complemental strand, 3306059 - 3305962
Alignment:
Q  187 taacacctatggcagaaaaaatgatgaaaaatagact-taggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    ||||||||||  ||||||| ||| || ||| | |||| ||||||||||| | || |||||||||||| | || |||||||||| ||||||||||||||    
T  3306059 taacacctatcacagaaaagatggtggaaacttgactataggtggtttgggcatttagagagaagacttgtaaattatgtagtaaagagagtagatca 3305962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 283
Target Start/End: Original strand, 12141539 - 12141644
Alignment:
Q  178 gagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagt 277  Q
    ||||||||||| ||||||| | |||||| ||| || |||| || ||||||||||||| | |  |||| ||||||||| |||||| | |||| | ||||||    
T  12141539 gagttggggtagcacctatagtagaaaagatggtggaaaagaggcttaggtggtttgggcacgtagaaagaagacctgtagattctctagtaaggagagt 12141638  T
Q  278 agatca 283  Q
    ||||||    
T  12141639 agatca 12141644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 42149889 - 42149828
Alignment:
Q  222 cttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    |||||||||||||||||| |||||||||  ||| |||||| |||||| | ||||||||||||    
T  42149889 cttaggtggtttgagtatgtagagagaaatcctatagattctgtagtaaggagagtagatca 42149828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 42543273 - 42543342
Alignment:
Q  221 acttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatcaattggag 290  Q
    |||||||||||||| | || || ||||||||||| | |||| |||||||| ||||||||||||| |||||    
T  42543273 acttaggtggtttgggcatgtacagagaagacctgtggattctgtagttaggagagtagatcaaatggag 42543342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 16097347 - 16097292
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 167  Q
    ||||||||||||| || |||| |||||||||||| ||| |||| ||||||||||||    
T  16097347 atgaggatgttgcactggatgagtggtaagactagatgggatatgattagaaatga 16097292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 283
Target Start/End: Original strand, 38434876 - 38435052
Alignment:
Q  112 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag----ttggggtaacacctatggcagaaaaaa 207  Q
    |||||||||||||  | |||| ||||||| |||| | |||| | |||||||||||| || |||||||||    |||||||| ||||||| | |||||| |    
T  38434876 atgaggatgttgcattggatgcgtggtaaaactagacgagagaagattagaaatgacaacattagagagagaattggggtagcacctatagtagaaaaga 38434975  T
Q  208 tgatgaaaaatagac-ttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    || || ||| ||||| || ||||||||| | || || ||||||||| | |||||  | |||| | ||||||||||||    
T  38434976 tggtggaaactagactttgggtggtttgggcatgtaaagagaagacttgtagatgctttagtaaggagagtagatca 38435052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 4598934 - 4598888
Alignment:
Q  99 aagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagacta 145  Q
    |||| |||||||||||| ||||||||| | |||||||||||||||||    
T  4598934 aagcgtagcagaaatgatgatgttgcgttggatgtgtggtaagacta 4598888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 41779573 - 41779515
Alignment:
Q  200 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttag 258  Q
    |||||||||| || ||| | ||||||||||||||||  || ||||||||||||||||||    
T  41779573 agaaaaaatggtggaaactcgacttaggtggtttgatcatgtagagagaagacctttag 41779515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 12026248 - 12026187
Alignment:
Q  222 cttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    ||||||||||||||  || |||||||||||||| |||||| |||| | | ||||||||||||    
T  12026248 cttaggtggtttgaccatgtagagagaagacctgtagattttgtactaaggagagtagatca 12026187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 37481860 - 37481799
Alignment:
Q  222 cttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    ||||||||||||||| || |||||||||||| | |  ||| |||||||| ||||||||||||    
T  37481860 cttaggtggtttgagcatgtagagagaagacttgtgaattttgtagttaggagagtagatca 37481799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 253
Target Start/End: Complemental strand, 3244016 - 3243865
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcag 201  Q
    ||||||| || ||||||||||| | |||| || ||||||||| |   ||||||||||  ||||| |  |||  ||||||| |||||| ||||||| | |     
T  3244016 tagcagagataaggatgttgcgttggatgagtagtaagactacacatgataggattatgaatgacaccattagagagagtgggggtagcacctatagtaa 3243917  T
Q  202 aaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 253  Q
    ||||  ||||| ||||||| ||||| ||||||| | || |||||||||||||    
T  3243916 aaaagttgatggaaaataggcttagatggtttgggaatgtagagagaagacc 3243865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 21834495 - 21834531
Alignment:
Q  129 gatgtgtggtaagactatatgagataggattagaaat 165  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  21834495 gatgtgtggtaagactagatgagataagattagaaat 21834531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 36183368 - 36183444
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  36183368 tagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacacaattagagag 36183444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 42092436 - 42092512
Alignment:
Q  104 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 180  Q
    ||||||| |||| ||||||||  | ||||||| ||||||||| | | |||| |||||||||||| ||| ||||||||    
T  42092436 tagcagagatgatgatgttgcattggatgtgtagtaagactagacgggatatgattagaaatgacaatgttagagag 42092512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 283
Target Start/End: Original strand, 43832091 - 43832198
Alignment:
Q  175 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaagag 274  Q
    |||||||||||||| ||||||| | | |||| ||| || ||| ||| |||||||| |||| | || || |||||| || | | ||||||||||||| |||    
T  43832091 agagagttggggtatcacctatagtaaaaaatatg-tggaaactaggcttaggtgatttgggcatgtacagagaaaacatgtggattatgtagttaggag 43832189  T
Q  275 agtagatca 283  Q
    |||||||||    
T  43832190 agtagatca 43832198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 347016 - 346955
Alignment:
Q  222 cttaggtggtttgagtatatagagagaagacctttagattatgtagttaagagagtagatca 283  Q
    ||||||||||||| |||| ||||||||| |||| |||||| |||||| | |||||| |||||    
T  347016 cttaggtggtttgggtatgtagagagaaaacctatagattctgtagtaaggagagttgatca 346955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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