View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7906_low_25 (Length: 252)
Name: NF7906_low_25
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7906_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 9935529 - 9935765
Alignment:
| Q |
1 |
aagataattaaaattcacatgattcagaagttgtagaggcaaaatgaaaaatgagcaggaattagagattgatagagcaaacactaaacaacattagcat |
100 |
Q |
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| T |
9935529 |
aagatacttaaaattcacatgatgcagaagttgtagaggcaaaatgaaaaatgagcaggaattagagattgatagagcaaacactaaacaacattagcat |
9935628 |
T |
|
| Q |
101 |
cttggctcttgtagttccagccaatcatgtcgtagtcttagaagatatgtaatttatgagagaatcatgtgttaatatgattgacaatgaagagatcgaa |
200 |
Q |
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| T |
9935629 |
cttagctcttgtagttccagccagtcatgtcgtagtcttagaagatatgtaatttatgagagaatcatgtgttaatatgattgacaatgaagagattgaa |
9935728 |
T |
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| Q |
201 |
gatttgaaggttgtaatccaattgattatgatggaaa |
237 |
Q |
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| T |
9935729 |
gatttgaaggttgtaatccaattgattatgatggaaa |
9935765 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 18729996 - 18729964
Alignment:
| Q |
49 |
aaatgagcaggaattagagattgatagagcaaa |
81 |
Q |
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| T |
18729996 |
aaatgagcaggaattagagatcgatagagcaaa |
18729964 |
T |
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