View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7906_low_26 (Length: 246)

Name: NF7906_low_26
Description: NF7906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7906_low_26
NF7906_low_26
[»] chr2 (3 HSPs)
chr2 (13-160)||(8759203-8759348)
chr2 (94-229)||(29758065-29758200)
chr2 (107-217)||(20516116-20516223)
[»] chr7 (8 HSPs)
chr7 (92-229)||(44963106-44963243)
chr7 (94-229)||(20046648-20046785)
chr7 (94-229)||(28124739-28124876)
chr7 (94-229)||(28126566-28126703)
chr7 (94-229)||(4895527-4895664)
chr7 (148-229)||(37405601-37405682)
chr7 (92-184)||(44962226-44962318)
chr7 (148-196)||(25471955-25472003)
[»] chr8 (10 HSPs)
chr8 (91-229)||(3375574-3375712)
chr8 (91-229)||(31032154-31032288)
chr8 (94-229)||(30224175-30224310)
chr8 (94-229)||(5567371-5567506)
chr8 (128-229)||(3379265-3379366)
chr8 (129-229)||(6428720-6428820)
chr8 (130-229)||(25248984-25249086)
chr8 (148-218)||(14935576-14935646)
chr8 (177-229)||(36535983-36536035)
chr8 (13-89)||(7231726-7231802)
[»] chr6 (14 HSPs)
chr6 (92-230)||(15149195-15149333)
chr6 (100-229)||(5378681-5378812)
chr6 (94-229)||(19645451-19645586)
chr6 (94-229)||(5376820-5376957)
chr6 (124-229)||(1088804-1088909)
chr6 (148-229)||(15868391-15868472)
chr6 (148-229)||(33866098-33866179)
chr6 (148-229)||(33869245-33869326)
chr6 (148-229)||(15866579-15866660)
chr6 (148-219)||(32079909-32079980)
chr6 (148-219)||(14611083-14611154)
chr6 (176-229)||(9415095-9415148)
chr6 (94-162)||(9414964-9415032)
chr6 (148-197)||(14620510-14620559)
[»] chr4 (13 HSPs)
chr4 (94-229)||(7040306-7040441)
chr4 (94-229)||(23564826-23564961)
chr4 (107-229)||(18656066-18656188)
chr4 (94-229)||(52518702-52518839)
chr4 (94-229)||(52520544-52520681)
chr4 (130-229)||(23566500-23566599)
chr4 (148-229)||(23985773-23985854)
chr4 (148-229)||(3529298-3529379)
chr4 (94-230)||(3274590-3274726)
chr4 (148-219)||(52545262-52545333)
chr4 (175-229)||(54296454-54296508)
chr4 (148-219)||(24807423-24807494)
chr4 (148-198)||(18395816-18395866)
[»] chr1 (12 HSPs)
chr1 (92-229)||(17449254-17449391)
chr1 (94-229)||(16808730-16808867)
chr1 (148-229)||(3282800-3282881)
chr1 (148-229)||(3284501-3284582)
chr1 (148-229)||(9310411-9310492)
chr1 (148-229)||(9312028-9312109)
chr1 (94-199)||(48940621-48940726)
chr1 (148-229)||(37664706-37664787)
chr1 (148-229)||(37674428-37674509)
chr1 (148-229)||(37702185-37702266)
chr1 (148-219)||(902076-902147)
chr1 (148-204)||(5924950-5925006)
[»] chr3 (4 HSPs)
chr3 (94-229)||(17402934-17403071)
chr3 (94-229)||(6789565-6789700)
chr3 (92-186)||(1139956-1140050)
chr3 (193-229)||(1140045-1140081)
[»] chr5 (1 HSPs)
chr5 (148-229)||(39787210-39787291)
[»] scaffold0251 (1 HSPs)
scaffold0251 (148-229)||(6225-6306)
[»] scaffold0057 (1 HSPs)
scaffold0057 (148-229)||(58785-58866)
[»] scaffold0006 (1 HSPs)
scaffold0006 (148-219)||(39144-39215)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 8759348 - 8759203
Alignment:
Q  13 aatattagtgcaatatctctctctagtaatcttgttcaacatcaatgccttaagcgtattgaaatagacattcacttggtattaagatagttgaaagtta 112  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8759348 aatattagtgcaatatctctct--agtaatcttgttcaacatcaatgccttaagcgtattgaaatagacattcacttggtattaagatagttggaagtta 8759251  T
Q  113 tgtagaggtaattaaggtagttagacttgagttagtaatcaactatag 160  Q
    ||| ||| || |||||||||||||||||||||||||||||||||||||    
T  8759250 tgtggagttagttaaggtagttagacttgagttagtaatcaactatag 8759203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 29758065 - 29758200
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttg 193  Q
    |||||||||||| ||||||||| ||| || |||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29758065 ttaagatagttggaagttatgtggagttagttaaggtagttagactagacttagtaatcaactatagttagttgataagtaaactagagttagtagcttg 29758164  T
Q  194 gttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||| |||||| |||||||||||||||||    
T  29758165 gttagaagttagttagaggtagttactcaaactaat 29758200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 217
Target Start/End: Complemental strand, 20516223 - 20516116
Alignment:
Q  107 aagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaat 206  Q
    |||||||||  || || |||||||| ||| ||| ||||||||||| ||||||||||||||   |||| | ||||||||||||||||||||| ||| || |    
T  20516223 aagttatgtgcagttagttaaggtaattaaactggagttagtaattaactatagttagtt---aagttagctagggttagtagcttggttaaaagatagt 20516127  T
Q  207 tagagttagtt 217  Q
    |||||||||||    
T  20516126 tagagttagtt 20516116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 92 - 229
Target Start/End: Original strand, 44963106 - 44963243
Alignment:
Q  92 tattaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagct 191  Q
    |||||||||||||| ||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44963106 tattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagct 44963205  T
Q  192 tggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  44963206 tggttagaagttagttagagttagttactcaaattaat 44963243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 20046785 - 20046648
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagtta--gtaatcaactatagttagttgataagtaaactagggttagtagct 191  Q
    |||| ||||||| |||||||||  || || |||||||||||||||| |||| |  |||||||||||||||||||||||||||||||||| |||||||| |    
T  20046785 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtagtt 20046686  T
Q  192 tggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  20046685 tggttagaagttagttagagttagttactcaaactaat 20046648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 28124876 - 28124739
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagtta--gtaatcaactatagttagttgataagtaaactagggttagtagct 191  Q
    |||| ||||||| |||||||||  || || |||||||||||||||| |||| |  |||||||||||||||||||||||||||||||||| |||||||| |    
T  28124876 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtagtt 28124777  T
Q  192 tggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  28124776 tggttagaagttagttagagttagttactcaaactaat 28124739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 28126703 - 28126566
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagtta--gtaatcaactatagttagttgataagtaaactagggttagtagct 191  Q
    |||| ||||||| |||||||||  || || |||||||||||||||| |||| |  |||||||||||||||||||||||||||||||||| |||||||| |    
T  28126703 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtagtt 28126604  T
Q  192 tggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  28126603 tggttagaagttagttagagttagttactcaaactaat 28126566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 4895527 - 4895664
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagtta--gtaatcaactatagttagttgataagtaaactagggttagtagct 191  Q
    |||| ||||||| |||||||||  || || |||||||||||||| | |||| |  |||||||||||||||||||||||||||||||||| |||||||| |    
T  4895527 ttaaaatagttggaagttatgtgtagttagttaaggtagttagattagagtaattgtaatcaactatagttagttgataagtaaactagagttagtagtt 4895626  T
Q  192 tggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  4895627 tggttagaagttagttagagttatttactcaaactaat 4895664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 37405682 - 37405601
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37405682 taatcaactatagttagttgatagataaactagagttagtagcttggttagaagttagttagagttagttactcaaactaat 37405601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 92 - 184
Target Start/End: Original strand, 44962226 - 44962318
Alignment:
Q  92 tattaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggtt 184  Q
    |||||| ||||||| |||||||||  || || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44962226 tattaacatagttggaagttatgtgaagttagttaaggtagttagacttgagtgagtaatcaactatagttagttgataagtaaactagggtt 44962318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 25472003 - 25471955
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggtt 196  Q
    |||| |||||||||||||||||| || |||||| |||||||| ||||||    
T  25472003 taattaactatagttagttgataggttaactagagttagtaggttggtt 25471955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 91 - 229
Target Start/End: Complemental strand, 3375712 - 3375574
Alignment:
Q  91 gtattaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagc 190  Q
    ||||||||||||||| ||||||||| ||| || |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3375712 gtattaagatagttggaagttatgtggagttagttaaggtagttagacttctgttagtaatcaactatagttagttgataagtaaactagggttagtagc 3375613  T
Q  191 ttggttagaagttaattagagttagttactcaaactaat 229  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  3375612 ttggttagaagttagttagagttagttactcaaactaat 3375574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 91 - 229
Target Start/End: Complemental strand, 31032288 - 31032154
Alignment:
Q  91 gtattaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagc 190  Q
    ||||||||||||||| ||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31032288 gtattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagc 31032189  T
Q  191 ttggttagaagttaattagagttagttactcaaactaat 229  Q
    |||||||||||    ||||||||||||||||||||||||    
T  31032188 ttggttagaag----ttagagttagttactcaaactaat 31032154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 30224175 - 30224310
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttg 193  Q
    |||||||||||| ||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30224175 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaactatagttagttgataagtaaactagagttagtagcttg 30224274  T
Q  194 gttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||| |||||| |||||||||||||||||    
T  30224275 gttagaagttagttagaggtagttactcaaactaat 30224310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 5567371 - 5567506
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttg 193  Q
    |||| |||| || |||||||||  || || |||| ||||||||||| ||||||||||||||||||||||||||||||  |||||||| |||||||||||     
T  5567371 ttaaaatagctggaagttatgtgaagttagttaaagtagttagactagagttagtaatcaactatagttagttgatagctaaactagagttagtagctta 5567470  T
Q  194 gttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||| || |||||||||||||||||||||    
T  5567471 gttagaagttagttggagttagttactcaaactaat 5567506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 3379366 - 3379265
Alignment:
Q  128 ggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaacta 227  Q
    |||||||||||| ||||||||||||||||||||||||||||||  |||||||| |||||||| || ||||||||||| ||||||||||||||||||||||    
T  3379366 ggtagttagactagagttagtaatcaactatagttagttgatagttaaactagagttagtagtttagttagaagttagttagagttagttactcaaacta 3379267  T
Q  228 at 229  Q
    ||    
T  3379266 at 3379265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 6428720 - 6428820
Alignment:
Q  129 gtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaa 228  Q
    ||||||||||  ||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||| |||||| |||||| ||||||||||||||||    
T  6428720 gtagttagacaagagttagtaatcaactataattagttgataagtaaactagagttagtaccttagttaaaagttagttagaggtagttactcaaactaa 6428819  T
Q  229 t 229  Q
    |    
T  6428820 t 6428820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 25248984 - 25249086
Alignment:
Q  130 tagttagacttgagttagtaatcaactatagttagttgataa---gtaaactagggttagtagcttggttagaagttaattagagttagttactcaaact 226  Q
    |||||||||| ||||||||||||||||||||||| |||||||   ||||||||| ||||||||||||||||||||||| ||| || ||||||||||||||    
T  25248984 tagttagactagagttagtaatcaactatagttaattgataataagtaaactagagttagtagcttggttagaagttagttaaaggtagttactcaaact 25249083  T
Q  227 aat 229  Q
    |||    
T  25249084 aat 25249086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 14935576 - 14935646
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagtta 218  Q
    ||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||| ||||| |||||||    
T  14935576 taatcaactatagttagttgataggtaaactagagttagtaacttggttagaagttagttagaattagtta 14935646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 36536035 - 36535983
Alignment:
Q  177 ctagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36536035 ctagagttagtagcttggttagaagttagttagagttagttactcaaactaat 36535983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 7231802 - 7231726
Alignment:
Q  13 aatattagtgcaatatctctctctagtaatcttgttcaacatcaatgccttaagcgtattgaaatagacattcactt 89  Q
    ||||||||||||||||  |||||| |||||| ||||||||||||| ||  |||||  ||||||||||||||||||||    
T  7231802 aatattagtgcaatatacctctctggtaatcatgttcaacatcaacgcactaagcacattgaaatagacattcactt 7231726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 92 - 230
Target Start/End: Complemental strand, 15149333 - 15149195
Alignment:
Q  92 tattaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagct 191  Q
    |||||||||||||| ||||||||  ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15149333 tattaagatagttggaagttatgcggagttagttaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggtcagtagct 15149234  T
Q  192 tggttagaagttaattagagttagttactcaaactaatt 230  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  15149233 tggttagaagttagttagagttagttactcaaattaatt 15149195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 5378681 - 5378812
Alignment:
Q  100 tagttgaaagttatgtagaggtaattaaggtagttagacttgagtta--gtaatcaactatagttagttgataagtaaactagggttagtagcttggtta 197  Q
    |||||| |||||||||  || || |||||||||||||||| |||| |  |||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  5378681 tagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtagtttggtta 5378780  T
Q  198 gaagttaattagagttagttactcaaactaat 229  Q
    ||||||| ||||||||||||||||||||||||    
T  5378781 gaagttagttagagttagttactcaaactaat 5378812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 19645586 - 19645451
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttg 193  Q
    |||||||||||  ||| ||||| ||| || |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  19645586 ttaagatagttagaagatatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactaaagttagtagcttg 19645487  T
Q  194 gttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||| ||| | |||| |||||||||||||||||    
T  19645486 gttagaaattagtcagaggtagttactcaaactaat 19645451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 5376820 - 5376957
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagtta--gtaatcaactatagttagttgataagtaaactagggttagtagct 191  Q
    |||| ||||||| ||||||| |  || || |||||||||||||||| |||| |  |||||||||||||||||||||||||||||||||| |||||||| |    
T  5376820 ttaaaatagttggaagttatatgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtagtt 5376919  T
Q  192 tggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  5376920 tggttagaagttagttagagttagttactcaaactaat 5376957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 124 - 229
Target Start/End: Complemental strand, 1088909 - 1088804
Alignment:
Q  124 ttaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaa 223  Q
    |||| ||||||| | | |||||||| ||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||||||| ||||    
T  1088909 ttaaagtagttaaattagagttagtgatcaactatagttagttgataagtaaattagagttagtagctttgttagaagttagttagagttagttagtcaa 1088810  T
Q  224 actaat 229  Q
    ||||||    
T  1088809 actaat 1088804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 15868391 - 15868472
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||    
T  15868391 taatcaactatagttagttgataggtaaactagagttaatagcttggttagaagttagttagagttagttactcaaactaat 15868472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 33866098 - 33866179
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  33866098 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcagactaat 33866179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 33869245 - 33869326
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  33869245 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttacttaaactaat 33869326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 15866579 - 15866660
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||| ||||||||| ||||||||||||||||||||||||    
T  15866579 taatcaactatagttagttgataggtaaactagagttaatagcttgggtagaagttagttagagttagttactcaaactaat 15866660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 32079909 - 32079980
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttac 219  Q
    ||||||||||||||||||||||| ||||||||| ||||| ||||||||||  ||||| ||||||||||||||    
T  32079909 taatcaactatagttagttgataggtaaactagagttagaagcttggttaagagttagttagagttagttac 32079980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 14611083 - 14611154
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttac 219  Q
    ||||||||||| ||||||||||| ||||| ||| ||||||||||| ||||  ||||| ||||||||||||||    
T  14611083 taatcaactatggttagttgataggtaaattagagttagtagcttcgttaagagttatttagagttagttac 14611154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 9415095 - 9415148
Alignment:
Q  176 actagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||    
T  9415095 actagagttagtagcttggttagaagttagttagagttagttagtgaaactaat 9415148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 9414964 - 9415032
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagtt 162  Q
    |||| ||||||| ||||||||  ||| || |||||||||||||||| |||||||| |||||||||||||    
T  9414964 ttaaaatagttggaagttatgcggagttagttaaggtagttagactagagttagtgatcaactatagtt 9415032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 14620510 - 14620559
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggtta 197  Q
    |||||||||||  |||||||||| ||||||||  ||||||||||||||||    
T  14620510 taatcaactatgattagttgataggtaaactacagttagtagcttggtta 14620559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 7040306 - 7040441
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttg 193  Q
    |||||||||||| ||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7040306 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaactatagttagttgataagtaaactagagttagtagcttg 7040405  T
Q  194 gttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||| |||||| |||||||||||||||||    
T  7040406 gttagaagttagttagaggtagttactcaaactaat 7040441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 23564961 - 23564826
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttg 193  Q
    |||||||||||| ||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23564961 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaactatagttagttgataagtaaactagagttagtagcttg 23564862  T
Q  194 gttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||| |||||| |||||||||||||||||    
T  23564861 gttagaagttagttagaggtagttactcaaactaat 23564826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 107 - 229
Target Start/End: Original strand, 18656066 - 18656188
Alignment:
Q  107 aagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaat 206  Q
    |||||||||  || || |||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| ||||||||||| ||||||||||| |    
T  18656066 aagttatgtgaagttagttaaggtagttagactagagttagtaatcaactatagttagttgatagctaaactagagttagtagcttagttagaagttagt 18656165  T
Q  207 tagagttagttactcaaactaat 229  Q
    |||||||||||||||||||||||    
T  18656166 tagagttagttactcaaactaat 18656188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 52518702 - 52518839
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagtta--gtaatcaactatagttagttgataagtaaactagggttagtagct 191  Q
    |||| ||||||| |||||||||  || || |||||||||||||||| |||| |  |||||||||||||||||||||||||||||||||| |||||||| |    
T  52518702 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtagtt 52518801  T
Q  192 tggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  52518802 tggttagaagttagttagagttagttactcaaactaat 52518839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 52520544 - 52520681
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagtta--gtaatcaactatagttagttgataagtaaactagggttagtagct 191  Q
    |||| ||||||| |||||||||  || || |||||||||||||||| |||| |  |||||||||||||||||||||||||||||||||| |||||||| |    
T  52520544 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtagtt 52520643  T
Q  192 tggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  52520644 tggttagaagttagttagagttagttactcaaactaat 52520681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 130 - 229
Target Start/End: Complemental strand, 23566599 - 23566500
Alignment:
Q  130 tagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||| |||||||||||||||||    
T  23566599 tagttagactagagttagtaatcaactatagttagttgataagtaaactagacttagtagcttggttagaagttagttagaggtagttactcaaactaat 23566500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 23985773 - 23985854
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  23985773 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaat 23985854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 3529379 - 3529298
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||| ||||||||||||| ||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3529379 taatcaactgtagttagttgataggtaaactaaagttagtagcttggttagaagttagttagagttagttactcaaactaat 3529298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 230
Target Start/End: Complemental strand, 3274726 - 3274590
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttg 193  Q
    |||| ||||||| ||||||| |  || || |||||||||| | |||  |||||||||||||||||| |||||||||| |||||| || |||||| |||||    
T  3274726 ttaaaatagttggaagttatatgaagttagttaaggtagtaaaactatagttagtaatcaactataattagttgataggtaaacaagagttagtggcttg 3274627  T
Q  194 gttagaagttaattagagttagttactcaaactaatt 230  Q
     |||||||||| ||||||||| ||||||||| |||||    
T  3274626 attagaagttagttagagttaattactcaaattaatt 3274590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 52545333 - 52545262
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttac 219  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  52545333 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttggttagagttagttac 52545262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 54296454 - 54296508
Alignment:
Q  175 aactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54296454 aactagagttagtagcttggttagaagttagttagagttagttactcaaactaat 54296508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 24807423 - 24807494
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttac 219  Q
    ||||||||||||||||||||||| ||||| ||| ||||| ||||||||||  |||||   ||||||||||||    
T  24807423 taatcaactatagttagttgataggtaaattagagttagaagcttggttaagagttaggaagagttagttac 24807494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 18395866 - 18395816
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttag 198  Q
    ||||||||||||||||||||||| ||||||||  |||| ||| ||||||||    
T  18395866 taatcaactatagttagttgataggtaaactatagttaataggttggttag 18395816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 92 - 229
Target Start/End: Original strand, 17449254 - 17449391
Alignment:
Q  92 tattaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagct 191  Q
    ||||| |||||||| ||||||| | ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17449254 tattatgatagttggaagttatatggagttagttaaggtagttggacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagct 17449353  T
Q  192 tggttagaagttaattagagttagttactcaaactaat 229  Q
    | ||||||||||| ||||||||||||||||||||||||    
T  17449354 tcgttagaagttagttagagttagttactcaaactaat 17449391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 16808867 - 16808730
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagtta--gtaatcaactatagttagttgataagtaaactagggttagtagct 191  Q
    |||| ||||||| |||||||||  || || |||||||||||||||| |||| |  |||||||||||||||||||||||||||||||||| |||||||| |    
T  16808867 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtagtt 16808768  T
Q  192 tggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  16808767 tggttagaagttagttagagttagttactcaaactaat 16808730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 3282800 - 3282881
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3282800 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaat 3282881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 3284501 - 3284582
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3284501 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaat 3284582  T

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Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 9310411 - 9310492
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  9310411 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagagttagttactcaaattaat 9310492  T

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Target: chr1; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 9312028 - 9312109
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9312028 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaat 9312109  T

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Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 48940621 - 48940726
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttg 193  Q
    |||| ||||||| ||||||||| ||| || |||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  48940621 ttaaaatagttggaagttatgtggagttagttaaggtagttagacaagagttagtaatcaactatagttagttgataagtaaactagagttagtagtttg 48940720  T
Q  194 gttaga 199  Q
    ||||||    
T  48940721 gttaga 48940726  T

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Target: chr1; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 37664787 - 37664706
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  37664787 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaat 37664706  T

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Target: chr1; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 37674509 - 37674428
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  37674509 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaat 37674428  T

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Target: chr1; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 37702185 - 37702266
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  37702185 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaaattagttagagttagttattcaaactaat 37702266  T

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Target: chr1; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 902076 - 902147
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttac 219  Q
    |||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  902076 taatcatctatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttac 902147  T

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Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 5925006 - 5924950
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagtta 204  Q
    ||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||||    
T  5925006 taatcaactatagttagttgataggtaaattagagttagtagtttggttagaagtta 5924950  T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 17403071 - 17402934
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagtta--gtaatcaactatagttagttgataagtaaactagggttagtagct 191  Q
    |||| ||||||| |||||||||  || || |||||||||||||||| |||| |  |||||||||||||||||||||||||||||||||| |||||||| |    
T  17403071 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtagtt 17402972  T
Q  192 tggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  17402971 tggttagaagttagttagagttagttactcaaactaat 17402934  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 6789565 - 6789700
Alignment:
Q  94 ttaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttg 193  Q
    |||| ||||||| |||| ||||  || || |||||||||||||||| ||||| |||||||  |||||||||| ||||||| |||||| ||||||||||||    
T  6789565 ttaaaatagttggaagtaatgtgtagttagttaaggtagttagactagagttggtaatcatgtatagttagtggataagtgaactagagttagtagcttg 6789664  T
Q  194 gttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||| ||||||||||||||||||||||||    
T  6789665 gttagaagttagttagagttagttactcaaactaat 6789700  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 1139956 - 1140050
Alignment:
Q  92 tattaagatagttgaaagttatgtagaggtaattaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttag 186  Q
    |||||||||||||| ||||||| | ||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1139956 tattaagatagttggaagttatatggagttagttaaggtagttggacttgagttagtaatcaactatagttagttgataagtaaactagggttag 1140050  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 1140045 - 1140081
Alignment:
Q  193 ggttagaagttaattagagttagttactcaaactaat 229  Q
    |||||||||||| ||||||||||||||||||||||||    
T  1140045 ggttagaagttagttagagttagttactcaaactaat 1140081  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 39787291 - 39787210
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39787291 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaat 39787210  T

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Target: scaffold0251 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 6225 - 6306
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    |||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6225 taatcaactatagttaattgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaat 6306  T

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Target: scaffold0057 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 58785 - 58866
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttactcaaactaat 229  Q
    |||||||||||||||||||  || ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  58785 taatcaactatagttagttagtaggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaat 58866  T

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Target: scaffold0006 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 39144 - 39215
Alignment:
Q  148 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttaattagagttagttac 219  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||    
T  39144 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttaaagttagttac 39215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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